RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 GTF2H1P32780 548 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 NDST1P52848 882 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 AP3M2P53677 418 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 CREMQ03060 361 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 ITIH3Q06033 890 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 TYRO3Q06418 890 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 KCNH2Q12809 1159 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 LRMPQ12912 555 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 MYO1EQ12965 1108 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 TRPC3Q13507 836 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 STIM1Q13586 685 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 SGSM1Q2NKQ1 1148 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 PPM1LQ5SGD2 360 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 TCERG1LQ5VWI1 586 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 TPGS2Q68CL5 300 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 GJB7Q6PEY0 223 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 DPH6Q7L8W6 267 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 ADHFE1Q8IWW8 467 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 TMEM86AQ8N2M4 240 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 ZMIZ2Q8NF64 920 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 SYAP1Q96A49 352 aaPredicted RBP9.86□□□□□ -0.83
VPS35-206ENST00000565228 PCED1BQ96HM7 432 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 RPGRIP1Q96KN7 1286 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 ZSWIM3Q96MP5 696 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 MMS19Q96T76 1030 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 UHRF1Q96T88 793 aaPredicted RBP9.86□□□□□ -0.83
VPS35-206ENST00000565228 SYT15Q9BQS2 421 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 ZSWIM1Q9BR11 485 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 PHF7Q9BWX1 381 aaPredicted RBP9.86□□□□□ -0.83
VPS35-206ENST00000565228 B3GNT5Q9BYG0 378 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 ZNF518BQ9C0D4 1074 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 IL21Q9HBE4 155 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 WDR6Q9NNW5 1121 aaKnown RBP9.86□□□□□ -0.83
VPS35-206ENST00000565228 RAB20Q9NX57 234 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 ARMCX3Q9UH62 379 aaPredicted RBP9.86□□□□□ -0.83
VPS35-206ENST00000565228 DSEQ9UL01 958 aa9.86□□□□□ -0.83
VPS35-206ENST00000565228 CLUHO75153 1309 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 MYH10P35580 1976 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 PATJQ8NI35 1801 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 BICDL2A1A5D9 508 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 TADA3O75528 432 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 RHOP08100 348 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 POU2F2P09086 479 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 CEBPBP17676 345 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 PTPN1P18031 435 aaKnown RBP9.85□□□□□ -0.83
VPS35-206ENST00000565228 PAX3P23760 479 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 GNL1P36915 607 aaPredicted RBP9.85□□□□□ -0.83
VPS35-206ENST00000565228 PPP1R2P41236 205 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 PGFP49763 221 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 USP46P62068 366 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 INCA1Q0VD86 236 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 KCNMA1Q12791 1236 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 DDR2Q16832 855 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 UVSSAQ2YD98 709 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 CCDC40Q4G0X9 1142 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 ZNF667Q5HYK9 610 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 MDH1BQ5I0G3 518 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 STXBP5Q5T5C0 1151 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 IER5LQ5T953 404 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 CDKAL1Q5VV42 579 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 PHLDB3Q6NSJ2 640 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 GAREM2Q75VX8 874 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 METTL23Q86XA0 190 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 C12orf29Q8N999 325 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 FBXL13Q8NEE6 735 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 OR6B3Q8NGW1 331 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 GIPC2Q8TF65 315 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 RSAD2Q8WXG1 361 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 ING5Q8WYH8 240 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 KREMEN1Q96MU8 473 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 GTPBP4Q9BZE4 634 aaKnown RBP9.85□□□□□ -0.83
VPS35-206ENST00000565228 SIX2Q9NPC8 291 aa9.85□□□□□ -0.83
VPS35-206ENST00000565228 ABI2Q9NYB9 513 aaPredicted RBP9.85□□□□□ -0.83
VPS35-206ENST00000565228 GOLGA6L22H0YM25 854 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 PMM2O15305 246 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 CILPO75339 1184 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 ASGR2P07307 311 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 HNRNPA1P09651 372 aaKnown RBP eCLIP9.84□□□□□ -0.83
VPS35-206ENST00000565228 CCDC130P13994 396 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 CD58P19256 250 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 SLC9A1P19634 815 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 BDNFP23560 247 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 ERCC5P28715 1186 aaPredicted RBP9.84□□□□□ -0.83
VPS35-206ENST00000565228 MTHFRP42898 656 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 LHX1P48742 406 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 KLK7P49862 253 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 RAD23BP54727 409 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 EPHA5P54756 1037 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 TNNC1P63316 161 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 MYL7Q01449 175 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 PTPN21Q16825 1174 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 AAK1Q2M2I8 961 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 KLHL40Q2TBA0 621 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 PUS10Q3MIT2 529 aaKnown RBP9.84□□□□□ -0.83
VPS35-206ENST00000565228 ATAT1Q5SQI0 421 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 ACOT1Q86TX2 421 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 GPIHBP1Q8IV16 184 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 DHX40Q8IX18 779 aaKnown RBP9.84□□□□□ -0.83
VPS35-206ENST00000565228 FUKQ8N0W3 1084 aa9.84□□□□□ -0.83
VPS35-206ENST00000565228 GJD3Q8N144 294 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms