RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 MYOZ2Q9NPC6 264 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 TMOD2Q9NZR1 351 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 CFAP73A6NFT4 308 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 GAS7O60861 476 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 RPS6KA5O75582 802 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 ATP6V1G2O95670 118 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 MASP1P48740 699 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 AARSP49588 968 aaKnown RBP eCLIP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 ATXN3P54252 364 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 ITIH3Q06033 890 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 OVGP1Q12889 678 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 CBX2Q14781 532 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 KIAA1755Q5JYT7 1200 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 MFSD14BQ5SR56 506 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 LIN9Q5TKA1 542 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 ZNF804AQ7Z570 1209 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 USP37Q86T82 979 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 TRIM59Q8IWR1 403 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 SYT2Q8N9I0 419 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 GIMAP8Q8ND71 665 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 AENQ8WTP8 325 aaKnown RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 SEMA4AQ9H3S1 761 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 IFT122Q9HBG6 1241 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 MARK1Q9P0L2 795 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 MARCOQ9UEW3 520 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 CNOT7Q9UIV1 285 aaKnown RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 RABGAP1Q9Y3P9 1069 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 PTCH2Q9Y6C5 1203 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 CCDC195A0A1B0GUA6 201 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 GPR25O00155 361 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 STXBP3O00186 592 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 DNAJA2O60884 412 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 SLC8A3P57103 927 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 BASP1P80723 227 aaKnown RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 BTKQ06187 659 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 MPP2Q14168 576 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 KLHDC7AQ5VTJ3 777 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 SCYL2Q6P3W7 929 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 TMED8Q6PL24 325 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 HHIPL2Q6UWX4 724 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 SAPCD2Q86UD0 394 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 PASD1Q8IV76 773 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 DCLK2Q8N568 766 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 SLC30A5Q8TAD4 765 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 SLC35G2Q8TBE7 412 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 TMEM47Q9BQJ4 181 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 ISCUQ9H1K1 167 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 TMBIM4Q9HC24 238 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 UBN1Q9NPG3 1134 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 ABCF3Q9NUQ8 709 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 NAGPAQ9UK23 515 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 ARL2BPQ9Y2Y0 163 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 LRRC10BA6NIK2 292 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 CREB3O43889 395 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 RHOBTB3O94955 611 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 MT-ND3P03897 115 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 HNRNPCP07910 306 aaKnown RBP eCLIP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 INHBAP08476 426 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 DESP17661 470 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 NCF2P19878 526 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 PSMC2P35998 433 aaKnown RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 RHBDL3P58872 404 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 KCNJ2P63252 427 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 DRP2Q13474 957 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 SPARCL1Q14515 664 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 C2CD6Q53TS8 623 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 MIIPQ5JXC2 388 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 UBAP2Q5T6F2 1119 aaKnown RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 C1orf146Q5VVC0 180 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 MAP1SQ66K74 1059 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 TTI2Q6NXR4 508 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 SULF2Q8IWU5 870 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 GUF1Q8N442 669 aaKnown RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 AGAP11Q8TF27 550 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 DNAJC9Q8WXX5 260 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 P3H4Q92791 437 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 TMEM237Q96Q45 408 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 SHCBP1LQ9BZQ2 653 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 OSGEPQ9NPF4 335 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 C11orf16Q9NQ32 467 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 BATF3Q9NR55 127 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 PAPOLBQ9NRJ5 636 aaKnown RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 ATP8A2Q9NTI2 1148 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 TYW1Q9NV66 732 aaKnown RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 NDFIP2Q9NV92 336 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 KLHL11Q9NVR0 708 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 STK17AQ9UEE5 414 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 ANAPC7Q9UJX3 599 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 TRIM33Q9UPN9 1127 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 PPP2R3BQ9Y5P8 575 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 CLDN3O15551 220 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 TOM1L1O75674 476 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 ASMTLO95671 621 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 MYL1P05976 194 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 UCHL3P15374 230 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 NQO1P15559 274 aaKnown RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 BTDP43251 543 aa5.78□□□□□ -1.48
LIMA1-203ENST00000547825 NSFP46459 744 aaKnown RBP5.78□□□□□ -1.48
LIMA1-203ENST00000547825 RPS26P62854 115 aaKnown RBP5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms