RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 SEMA6BQ9H3T3 888 aa16.79■□□□□ 0.28
NPHP3-201ENST00000337331 ACAD9Q9H845 621 aa16.79■□□□□ 0.28
NPHP3-201ENST00000337331 RBMX2Q9Y388 322 aaKnown RBP16.79■□□□□ 0.28
NPHP3-201ENST00000337331 IQCA1LA6NCM1 817 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 COQ9O75208 318 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 SMARCA1P28370 1054 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 BAATQ14032 418 aaPredicted RBP16.78■□□□□ 0.28
NPHP3-201ENST00000337331 TRIM16LQ309B1 348 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 KLHL4Q9C0H6 718 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 SMIM31A0A1B0GVY4 71 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 DGAT1O75907 488 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 YY1P25490 414 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 HEATR6Q6AI08 1181 aaKnown RBP16.78■□□□□ 0.28
NPHP3-201ENST00000337331 RNF149Q8NC42 400 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 GCNAQ96QF7 691 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 EIF2AQ9BY44 585 aaKnown RBP16.78■□□□□ 0.28
NPHP3-201ENST00000337331 DHX35Q9H5Z1 703 aaKnown RBP16.78■□□□□ 0.28
NPHP3-201ENST00000337331 ATP11BQ9Y2G3 1177 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 MTO1Q9Y2Z2 717 aaKnown RBP16.78■□□□□ 0.28
NPHP3-201ENST00000337331 CD163L1Q9NR16 1453 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 KIF13AQ9H1H9 1805 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 SEC24DO94855 1032 aaPredicted RBP16.78■□□□□ 0.28
NPHP3-201ENST00000337331 LCA5LO95447 670 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 CREB1P16220 341 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 ATICP31939 592 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 SLC1A1P43005 524 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 ARPP19P56211 112 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 PPP4CP60510 307 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 INAQ16352 499 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 EPC2Q52LR7 807 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 PRPF39Q86UA1 669 aaKnown RBP16.78■□□□□ 0.28
NPHP3-201ENST00000337331 ZBTB8BQ8NAP8 495 aaPredicted RBP16.78■□□□□ 0.28
NPHP3-201ENST00000337331 SCFD2Q8WU76 684 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 TLCD1Q96CP7 247 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 DGCR14Q96DF8 476 aaKnown RBP16.78■□□□□ 0.28
NPHP3-201ENST00000337331 JPH1Q9HDC5 661 aaPredicted RBP16.78■□□□□ 0.28
NPHP3-201ENST00000337331 EURLQ9NYK6 297 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 MYOM1P52179 1685 aa16.78■□□□□ 0.28
NPHP3-201ENST00000337331 ITIH2P19823 946 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 RXRBP28702 533 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 TSTA3Q13630 321 aaPredicted RBP16.77■□□□□ 0.28
NPHP3-201ENST00000337331 STRIP1Q5VSL9 837 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 PYDC1Q8WXC3 89 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 EXT2Q93063 718 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 ITGB1BP2Q9UKP3 347 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 SYCP2LQ5T4T6 812 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 SYN2Q92777 582 aaPredicted RBP16.77■□□□□ 0.28
NPHP3-201ENST00000337331 TMEM143Q96AN5 459 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 BTBD6Q96KE9 485 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 ECSITQ9BQ95 431 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 SELENONQ9NZV5 590 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 PIM2Q9P1W9 311 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 SATB2Q9UPW6 733 aa16.77■□□□□ 0.28
NPHP3-201ENST00000337331 KDM6AO15550 1401 aaPredicted RBP16.77■□□□□ 0.27
NPHP3-201ENST00000337331 DDX3XO00571 662 aaKnown RBP eCLIP16.77■□□□□ 0.27
NPHP3-201ENST00000337331 NUDT17P0C025 328 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 CDK7P50613 346 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 NPEPPSP55786 919 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 ROR1Q01973 937 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 PLA2G4FQ68DD2 849 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 ZNF571Q7Z3V5 609 aaPredicted RBP16.77■□□□□ 0.27
NPHP3-201ENST00000337331 DAGLBQ8NCG7 672 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 ERLEC1Q96DZ1 483 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 C2orf40Q9H1Z8 148 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 MANSC1Q9H8J5 431 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 DDX56Q9NY93 547 aaKnown RBP16.77■□□□□ 0.27
NPHP3-201ENST00000337331 SENP1Q9P0U3 644 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 FAM205AQ6ZU69 1335 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 KRT4P19013 534 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 FGFR2P21802 821 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 PMLP29590 882 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 CHRNA5P30532 468 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 COILP38432 576 aaPredicted RBP16.77■□□□□ 0.27
NPHP3-201ENST00000337331 HMGCS2P54868 508 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 NAA20P61599 178 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 TNFAIP2Q03169 654 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 OASLQ15646 514 aaKnown RBP16.77■□□□□ 0.27
NPHP3-201ENST00000337331 PKN1Q16512 942 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 CCNYL1Q8N7R7 359 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 RPAP3Q9H6T3 665 aaPredicted RBP16.77■□□□□ 0.27
NPHP3-201ENST00000337331 SPATA7Q9P0W8 599 aa16.77■□□□□ 0.27
NPHP3-201ENST00000337331 USP1O94782 785 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 CIITAP33076 1130 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 ACAP3Q96P50 834 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 PHF12Q96QT6 1004 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 YIPF2Q9BWQ6 316 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 HUS1O60921 280 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 EIF3EP60228 445 aaKnown RBP16.76■□□□□ 0.27
NPHP3-201ENST00000337331 CENPPQ6IPU0 288 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 HHIPL2Q6UWX4 724 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 SH3TC2Q8TF17 1288 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 TUBGCP5Q96RT8 1024 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 GID8Q9NWU2 228 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 BFARQ9NZS9 450 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 GOLGA8CPA6NN73 597 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 FDX1P10109 184 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 MYL2P10916 166 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 VCAM1P19320 739 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 RFWD3Q6PCD5 774 aa16.76■□□□□ 0.27
NPHP3-201ENST00000337331 LPCAT2Q7L5N7 544 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms