RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 IFT20Q8IY31 132 aa24■■□□□ 1.43
CDX1-201ENST00000231656 HPDLQ96IR7 371 aa24■■□□□ 1.43
CDX1-201ENST00000231656 UBN1Q9NPG3 1134 aa24■■□□□ 1.43
CDX1-201ENST00000231656 MIOSQ9NXC5 875 aa24■■□□□ 1.43
CDX1-201ENST00000231656 TDRD15B5MCY1 1934 aaKnown RBP24■■□□□ 1.43
CDX1-201ENST00000231656 ENPP3O14638 875 aa23.99■■□□□ 1.43
CDX1-201ENST00000231656 CTNNA1P35221 906 aaKnown RBP23.99■■□□□ 1.43
CDX1-201ENST00000231656 PTP4A2Q12974 167 aa23.99■■□□□ 1.43
CDX1-201ENST00000231656 ZNF211Q13398 564 aaPredicted RBP23.99■■□□□ 1.43
CDX1-201ENST00000231656 WDR72Q3MJ13 1102 aa23.99■■□□□ 1.43
CDX1-201ENST00000231656 ZNF667Q5HYK9 610 aa23.99■■□□□ 1.43
CDX1-201ENST00000231656 PPP1R2P3Q6NXS1 205 aa23.99■■□□□ 1.43
CDX1-201ENST00000231656 VCPIP1Q96JH7 1222 aa23.99■■□□□ 1.43
CDX1-201ENST00000231656 POLIQ9UNA4 740 aa23.99■■□□□ 1.43
CDX1-201ENST00000231656 PPEF2O14830 753 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 STAU1O95793 577 aaKnown RBP23.98■■□□□ 1.43
CDX1-201ENST00000231656 THP07101 528 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 WEE2P0C1S8 567 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 SSTR3P32745 418 aaPredicted RBP23.98■■□□□ 1.43
CDX1-201ENST00000231656 SCNN1GP51170 649 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 C9orf57Q5W0N0 161 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 SCARA5Q6ZMJ2 495 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 DEFB128Q7Z7B8 93 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 FAXDC2Q96IV6 333 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 VIPAS39Q9H9C1 493 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 GOLGA2P5Q9HBQ8 144 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 ST7Q9NRC1 585 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 NXF1Q9UBU9 619 aaKnown RBP23.98■■□□□ 1.43
CDX1-201ENST00000231656 ANAPC7Q9UJX3 599 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 ZSCAN5CA6NGD5 496 aaPredicted RBP23.98■■□□□ 1.43
CDX1-201ENST00000231656 BHMG1C9JSJ3 638 aaPredicted RBP23.98■■□□□ 1.43
CDX1-201ENST00000231656 TNNT3P45378 269 aaPredicted RBP23.98■■□□□ 1.43
CDX1-201ENST00000231656 GUCY2DQ02846 1103 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 CLUL1Q15846 466 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 NAP1L3Q99457 506 aaPredicted RBP23.98■■□□□ 1.43
CDX1-201ENST00000231656 BCO2Q9BYV7 579 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 DDX47Q9H0S4 455 aaKnown RBP23.98■■□□□ 1.43
CDX1-201ENST00000231656 SLITRK6Q9H5Y7 841 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 EPB41L5Q9HCM4 733 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 SLC38A7Q9NVC3 462 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 PCDHA3Q9Y5H8 950 aa23.98■■□□□ 1.43
CDX1-201ENST00000231656 TTC3P53804 2025 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 CCDC66A2RUB6 948 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 TRIM43BA6NCK2 446 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 PIRO00625 290 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 SART1O43290 800 aaKnown RBP23.97■■□□□ 1.43
CDX1-201ENST00000231656 SPOPO43791 374 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 YWHAEP62258 255 aaKnown RBP23.97■■□□□ 1.43
CDX1-201ENST00000231656 C1QBPQ07021 282 aaKnown RBP23.97■■□□□ 1.43
CDX1-201ENST00000231656 MYO1EQ12965 1108 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 C2CD6Q53TS8 623 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 LIN9Q5TKA1 542 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 LLGL2Q6P1M3 1020 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 LRRC52Q8N7C0 313 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 TRIM43Q96BQ3 446 aaPredicted RBP23.97■■□□□ 1.43
CDX1-201ENST00000231656 C11orf70Q9BRQ4 267 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 PRDM5Q9NQX1 630 aaPredicted RBP23.97■■□□□ 1.43
CDX1-201ENST00000231656 ADAM22Q9P0K1 906 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 NR2E1Q9Y466 385 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 MICAL3Q7RTP6 2002 aa23.97■■□□□ 1.43
CDX1-201ENST00000231656 KIAA0355O15063 1070 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 BRD2P25440 801 aaKnown RBP23.96■■□□□ 1.43
CDX1-201ENST00000231656 ITGB8P26012 769 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 EPHB4P54760 987 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 CASKIN2Q8WXE0 1202 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 TRIM7Q9C029 511 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 LSM8O95777 96 aaKnown RBP23.96■■□□□ 1.43
CDX1-201ENST00000231656 TIMP1P01033 207 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 LRPAP1P30533 357 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 CARSP49589 748 aaKnown RBP23.96■■□□□ 1.43
CDX1-201ENST00000231656 AADACL2Q6P093 401 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 MMS22LQ6ZRQ5 1243 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 PHLDB2Q86SQ0 1253 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 VWCEQ96DN2 955 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 GDAP1L1Q96MZ0 367 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 PLEKHA4Q9H4M7 779 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 TMEM161AQ9NX61 479 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 HPCAL4Q9UM19 191 aa23.96■■□□□ 1.43
CDX1-201ENST00000231656 ALPK3Q96L96 1907 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 INPPL1O15357 1258 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 POMCP01189 267 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 MMP8P22894 467 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 RFC2P35250 354 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 ZNF394Q53GI3 561 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 PLEKHA7Q6IQ23 1121 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 EMBQ6PCB8 327 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 TFAP2BQ92481 460 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 CAVIN3Q969G5 261 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 SDCBP2Q9H190 292 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 ELAC1Q9H777 363 aaKnown RBP23.95■■□□□ 1.42
CDX1-201ENST00000231656 PCDHGC3Q9UN70 934 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 INPP5FQ9Y2H2 1132 aa23.95■■□□□ 1.42
CDX1-201ENST00000231656 ESYT3A0FGR9 886 aa23.94■■□□□ 1.42
CDX1-201ENST00000231656 H3BQF6 201 aa23.94■■□□□ 1.42
CDX1-201ENST00000231656 P4HA1P13674 534 aa23.94■■□□□ 1.42
CDX1-201ENST00000231656 OAS2P29728 719 aaKnown RBP23.94■■□□□ 1.42
CDX1-201ENST00000231656 CDH5P33151 784 aaPredicted RBP23.94■■□□□ 1.42
CDX1-201ENST00000231656 RAP1GAPP47736 663 aa23.94■■□□□ 1.42
CDX1-201ENST00000231656 MAMLD1Q13495 774 aa23.94■■□□□ 1.42
CDX1-201ENST00000231656 CLLU1OSQ5K130 101 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms