RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 LIMS2Q7Z4I7 341 aa21.05■□□□□ 0.96
SHKBP1-214ENST00000597396 FAM114A1Q8IWE2 563 aa21.05■□□□□ 0.96
SHKBP1-214ENST00000597396 TRIM59Q8IWR1 403 aa21.05■□□□□ 0.96
SHKBP1-214ENST00000597396 DCP1BQ8IZD4 617 aaKnown RBP21.05■□□□□ 0.96
SHKBP1-214ENST00000597396 CMASQ8NFW8 434 aaPredicted RBP21.05■□□□□ 0.96
SHKBP1-214ENST00000597396 KBTBD7Q8WVZ9 684 aa21.05■□□□□ 0.96
SHKBP1-214ENST00000597396 PGLYRP2Q96PD5 576 aa21.05■□□□□ 0.96
SHKBP1-214ENST00000597396 ACBD6Q9BR61 282 aa21.05■□□□□ 0.96
SHKBP1-214ENST00000597396 MRPL45Q9BRJ2 306 aaKnown RBP21.05■□□□□ 0.96
SHKBP1-214ENST00000597396 THAP9Q9H5L6 903 aa21.05■□□□□ 0.96
SHKBP1-214ENST00000597396 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.05■□□□□ 0.96
SHKBP1-214ENST00000597396 DENND4AQ7Z401 1863 aa21.05■□□□□ 0.96
SHKBP1-214ENST00000597396 GABRDO14764 452 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 TACC1O75410 805 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 FAM163BP0C2L3 166 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 IL9P15248 144 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 ACAT1P24752 427 aaKnown RBP21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 MTHFRP42898 656 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 FMO5P49326 533 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 TYRO3Q06418 890 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 RTL10Q7L3V2 364 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 OR6B3Q8NGW1 331 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 RIPOR3Q96MK2 946 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 C1QTNF1Q9BXJ1 281 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 SMYD3Q9H7B4 428 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 PIDD1Q9HB75 910 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 RAB20Q9NX57 234 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 MAGEC2Q9UBF1 373 aaPredicted RBP21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 MAFFQ9ULX9 164 aa21.04■□□□□ 0.96
SHKBP1-214ENST00000597396 MTMR11A4FU01 709 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 LETM1O95202 739 aaPredicted RBP21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 LRG1P02750 347 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 HNRNPA1P09651 372 aaKnown RBP eCLIP21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 WEE2P0C1S8 567 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 MTIF2P46199 727 aaKnown RBP21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 CETN1Q12798 172 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 SMAD2Q15796 467 aaKnown RBP21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 WDR44Q5JSH3 913 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 INTS6LQ5JSJ4 861 aaKnown RBP21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 ATAT1Q5SQI0 421 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 C11orf57Q6ZUT1 292 aaPredicted RBP21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 GPR149Q86SP6 731 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 TCEAL8Q8IYN2 117 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 SMG7Q92540 1137 aaKnown RBP21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 SEMA4DQ92854 862 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 SYT15Q9BQS2 421 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 PRKD2Q9BZL6 878 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 DNAJC25Q9H1X3 360 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 RAPGEFL1Q9UHV5 662 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 CDH22Q9UJ99 828 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 PTPRDP23468 1912 aa21.03■□□□□ 0.96
SHKBP1-214ENST00000597396 CCL16O15467 120 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 HCRTO43612 131 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 XYLBO75191 536 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 SEC24AO95486 1093 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 AFPP02771 609 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 PDGFRBP09619 1106 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 HOXA9P31269 272 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 GNL1P36915 607 aaPredicted RBP21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 RAP1GAPP47736 663 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 CDH8P55286 799 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 KCNH2Q12809 1159 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 SMARCB1Q12824 385 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 CBX2Q14781 532 aaPredicted RBP21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 CYP26C1Q6V0L0 522 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 ENOX1Q8TC92 643 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 SUSD6Q92537 303 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 NECTIN4Q96NY8 510 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 NIF3L1Q9GZT8 377 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 APOBEC3GQ9HC16 384 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 CDH9Q9ULB4 789 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 COQ4Q9Y3A0 265 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 NFE2L3Q9Y4A8 694 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 INSL5Q9Y5Q6 135 aa21.02■□□□□ 0.96
SHKBP1-214ENST00000597396 A8MXQ7 604 aa21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 LRRN2O75325 713 aa21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 LMO2P25791 158 aa21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 CDR1P51861 262 aa21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 DUSP4Q13115 394 aa21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 NFE2Q16621 373 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 HSP90AA4PQ58FG1 418 aa21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 LRRTM3Q86VH5 581 aa21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 IRF2BP1Q8IU81 584 aa21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 ATAD1Q8NBU5 361 aa21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 C2orf15Q8WU43 125 aaKnown RBP21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 ZNF707Q96C28 371 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 SDCBP2Q9H190 292 aa21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 EPHX3Q9H6B9 360 aa21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 ABI2Q9NYB9 513 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-214ENST00000597396 P4HA2O15460 535 aa21■□□□□ 0.95
SHKBP1-214ENST00000597396 VNN2O95498 520 aa21■□□□□ 0.95
SHKBP1-214ENST00000597396 ASPAP45381 313 aa21■□□□□ 0.95
SHKBP1-214ENST00000597396 PSMC1P62191 440 aaKnown RBP21■□□□□ 0.95
SHKBP1-214ENST00000597396 FEZF2Q8TBJ5 459 aa21■□□□□ 0.95
SHKBP1-214ENST00000597396 SPPL2BQ8TCT7 592 aa21■□□□□ 0.95
SHKBP1-214ENST00000597396 BCO2Q9BYV7 579 aa21■□□□□ 0.95
SHKBP1-214ENST00000597396 RHOBTB2Q9BYZ6 727 aa21■□□□□ 0.95
SHKBP1-214ENST00000597396 NAT10Q9H0A0 1025 aaKnown RBP21■□□□□ 0.95
SHKBP1-214ENST00000597396 CYP3A43Q9HB55 503 aa21■□□□□ 0.95
SHKBP1-214ENST00000597396 SAMSN1Q9NSI8 373 aaKnown RBP21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms