RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 WEE2P0C1S8 567 aa23.16■■□□□ 1.3
SNX1-206ENST00000559389 SLC9A1P19634 815 aa23.16■■□□□ 1.3
SNX1-206ENST00000559389 LMO2P25791 158 aa23.16■■□□□ 1.3
SNX1-206ENST00000559389 PON1P27169 355 aa23.16■■□□□ 1.3
SNX1-206ENST00000559389 ARPP19P56211 112 aa23.16■■□□□ 1.3
SNX1-206ENST00000559389 TSPY1Q01534 308 aa23.16■■□□□ 1.3
SNX1-206ENST00000559389 FKBP15Q5T1M5 1219 aa23.16■■□□□ 1.3
SNX1-206ENST00000559389 LLGL2Q6P1M3 1020 aa23.16■■□□□ 1.3
SNX1-206ENST00000559389 TMEM184AQ6ZMB5 413 aa23.16■■□□□ 1.3
SNX1-206ENST00000559389 RNF214Q8ND24 703 aa23.16■■□□□ 1.3
SNX1-206ENST00000559389 PABPC5Q96DU9 382 aaKnown RBP23.16■■□□□ 1.3
SNX1-206ENST00000559389 FAM124BQ9H5Z6 455 aaPredicted RBP23.16■■□□□ 1.3
SNX1-206ENST00000559389 SIX2Q9NPC8 291 aa23.16■■□□□ 1.3
SNX1-206ENST00000559389 HMGXB4Q9UGU5 601 aa23.16■■□□□ 1.3
SNX1-206ENST00000559389 A8MXQ7 604 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 TBX10O75333 385 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 ABLIM3O94929 683 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 GNL1P36915 607 aaPredicted RBP23.15■■□□□ 1.3
SNX1-206ENST00000559389 GCNT1Q02742 428 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 KCNMA1Q12791 1236 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 GPR17Q13304 367 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 ADAM15Q13444 863 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 TPGS2Q68CL5 300 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 PHLDB3Q6NSJ2 640 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 PPM1KQ8N3J5 372 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 UBR7Q8N806 425 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 ZNF461Q8TAF7 563 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 PPM1EQ8WY54 764 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 CASP10Q92851 521 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 MAN1C1Q9NR34 630 aa23.15■■□□□ 1.3
SNX1-206ENST00000559389 AFF4Q9UHB7 1163 aaKnown RBP23.15■■□□□ 1.3
SNX1-206ENST00000559389 MTMR11A4FU01 709 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 CILPO75339 1184 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 VNN2O95498 520 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 SRGAP2BP0DMP2 458 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 CD58P19256 250 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 NDST1P52848 882 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 PSMC1P62191 440 aaKnown RBP23.14■■□□□ 1.29
SNX1-206ENST00000559389 CCDC142Q17RM4 750 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 DPY19L2P1Q6NXN4 242 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 RNF19BQ6ZMZ0 732 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 LRRTM3Q86VH5 581 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 UNC93AQ86WB7 457 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 DCP1BQ8IZD4 617 aaKnown RBP23.14■■□□□ 1.29
SNX1-206ENST00000559389 TTC39CQ8N584 583 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 KAT5Q92993 513 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 DPEP3Q9H4B8 488 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 CRTAC1Q9NQ79 661 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 CISHQ9NSE2 258 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 DZANK1Q9NVP4 752 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 CLDND1Q9NY35 253 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 APEX2Q9UBZ4 518 aa23.14■■□□□ 1.29
SNX1-206ENST00000559389 BARX2Q9UMQ3 279 aaPredicted RBP23.14■■□□□ 1.29
SNX1-206ENST00000559389 ATP2C2O75185 946 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 PDGFRBP09619 1106 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 ATF2P15336 505 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 YWHAEP62258 255 aaKnown RBP23.13■■□□□ 1.29
SNX1-206ENST00000559389 APBA1Q02410 837 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 SMARCB1Q12824 385 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 SLC39A12Q504Y0 691 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 KREMEN2Q8NCW0 462 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 WHAMMQ8TF30 809 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 HDAC7Q8WUI4 952 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 KREMEN1Q96MU8 473 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 PGLYRP2Q96PD5 576 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 TWNKQ96RR1 684 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 PLEKHA4Q9H4M7 779 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 TMLHEQ9NVH6 421 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 MAFFQ9ULX9 164 aa23.13■■□□□ 1.29
SNX1-206ENST00000559389 A0A1B0GTH6 734 aa23.12■■□□□ 1.29
SNX1-206ENST00000559389 FANCCQ00597 558 aa23.12■■□□□ 1.29
SNX1-206ENST00000559389 UBXN1Q04323 297 aa23.12■■□□□ 1.29
SNX1-206ENST00000559389 SKIV2LQ15477 1246 aaKnown RBP23.12■■□□□ 1.29
SNX1-206ENST00000559389 NFE2Q16621 373 aaPredicted RBP23.12■■□□□ 1.29
SNX1-206ENST00000559389 FAM171BQ6P995 826 aa23.12■■□□□ 1.29
SNX1-206ENST00000559389 RRAGAQ7L523 313 aa23.12■■□□□ 1.29
SNX1-206ENST00000559389 B3GALNT2Q8NCR0 500 aa23.12■■□□□ 1.29
SNX1-206ENST00000559389 TNIP3Q96KP6 325 aa23.12■■□□□ 1.29
SNX1-206ENST00000559389 ERGIC2Q96RQ1 377 aa23.12■■□□□ 1.29
SNX1-206ENST00000559389 ANP32EQ9BTT0 268 aa23.12■■□□□ 1.29
SNX1-206ENST00000559389 LSM14BQ9BX40 385 aaKnown RBP23.12■■□□□ 1.29
SNX1-206ENST00000559389 RTN4Q9NQC3 1192 aaKnown RBP23.12■■□□□ 1.29
SNX1-206ENST00000559389 CLEC1BQ9P126 229 aa23.12■■□□□ 1.29
SNX1-206ENST00000559389 SIK3Q9Y2K2 1263 aa23.12■■□□□ 1.29
SNX1-206ENST00000559389 MTCL1Q9Y4B5 1905 aaKnown RBP23.12■■□□□ 1.29
SNX1-206ENST00000559389 MYBPHLA2RUH7 354 aa23.11■■□□□ 1.29
SNX1-206ENST00000559389 SERPINC1P01008 464 aa23.11■■□□□ 1.29
SNX1-206ENST00000559389 SPATA31D3P0C874 917 aa23.11■■□□□ 1.29
SNX1-206ENST00000559389 ACO1P21399 889 aaKnown RBP23.11■■□□□ 1.29
SNX1-206ENST00000559389 LTBRP36941 435 aa23.11■■□□□ 1.29
SNX1-206ENST00000559389 DLX2Q07687 328 aaPredicted RBP23.11■■□□□ 1.29
SNX1-206ENST00000559389 ADCY1Q08828 1119 aa23.11■■□□□ 1.29
SNX1-206ENST00000559389 SYCP1Q15431 976 aa23.11■■□□□ 1.29
SNX1-206ENST00000559389 MAPRE1Q15691 268 aaKnown RBP23.11■■□□□ 1.29
SNX1-206ENST00000559389 FILIP1LQ4L180 1135 aa23.11■■□□□ 1.29
SNX1-206ENST00000559389 LIN9Q5TKA1 542 aa23.11■■□□□ 1.29
SNX1-206ENST00000559389 GJB7Q6PEY0 223 aa23.11■■□□□ 1.29
SNX1-206ENST00000559389 ELMSAN1Q6PJG2 1045 aa23.11■■□□□ 1.29
SNX1-206ENST00000559389 SPATA31D4Q6ZUB0 917 aa23.11■■□□□ 1.29
SNX1-206ENST00000559389 ENOSF1Q7L5Y1 443 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms