RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 FBXO46Q6PJ61 603 aaPredicted RBP17.86■□□□□ 0.45
LDLR-206ENST00000557958 KRT35Q92764 455 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 BTBD6Q96KE9 485 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 GDF3Q9NR23 364 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 SNTG2Q9NY99 539 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 PHF24Q9UPV7 400 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 TRPV2Q9Y5S1 764 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 DNM1LO00429 736 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 RAD51CO43502 376 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 CFHP08603 1231 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 MAN1A1P33908 653 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 DNAJC24Q6P3W2 148 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 ERICH1Q86X53 443 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 LRRC52Q8N7C0 313 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 C1orf131Q8NDD1 294 aaKnown RBP17.86■□□□□ 0.45
LDLR-206ENST00000557958 AENQ8WTP8 325 aaKnown RBP17.86■□□□□ 0.45
LDLR-206ENST00000557958 TMEM176AQ96HP8 235 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 RUNDC3BQ96NL0 473 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 SMYD3Q9H7B4 428 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 EPB41L5Q9HCM4 733 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 CNTN3Q9P232 1028 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 IP6K2Q9UHH9 426 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 KIAA1257Q9ULG3 409 aa17.86■□□□□ 0.45
LDLR-206ENST00000557958 ARVCFO00192 962 aa17.85■□□□□ 0.45
LDLR-206ENST00000557958 CHRNA1P02708 482 aa17.85■□□□□ 0.45
LDLR-206ENST00000557958 RAP1GAPP47736 663 aa17.85■□□□□ 0.45
LDLR-206ENST00000557958 ATN1P54259 1190 aaPredicted RBP17.85■□□□□ 0.45
LDLR-206ENST00000557958 RAD23BP54727 409 aa17.85■□□□□ 0.45
LDLR-206ENST00000557958 PTPN11Q06124 597 aaPredicted RBP17.85■□□□□ 0.45
LDLR-206ENST00000557958 INCA1Q0VD86 236 aa17.85■□□□□ 0.45
LDLR-206ENST00000557958 PTP4A2Q12974 167 aa17.85■□□□□ 0.45
LDLR-206ENST00000557958 ZNF211Q13398 564 aaPredicted RBP17.85■□□□□ 0.45
LDLR-206ENST00000557958 NNTQ13423 1086 aa17.85■□□□□ 0.45
LDLR-206ENST00000557958 CUL1Q13616 776 aa17.85■□□□□ 0.45
LDLR-206ENST00000557958 FEZF2Q8TBJ5 459 aa17.85■□□□□ 0.45
LDLR-206ENST00000557958 MAIP1Q8WWC4 291 aa17.85■□□□□ 0.45
LDLR-206ENST00000557958 EIF2AQ9BY44 585 aaKnown RBP17.85■□□□□ 0.45
LDLR-206ENST00000557958 DNAI2Q9GZS0 605 aa17.85■□□□□ 0.45
LDLR-206ENST00000557958 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.85■□□□□ 0.452e-10■■□□□ 12.6
LDLR-206ENST00000557958 BARX2Q9UMQ3 279 aaPredicted RBP17.85■□□□□ 0.45
LDLR-206ENST00000557958 UBQLN1Q9UMX0 589 aaKnown RBP17.85■□□□□ 0.45
LDLR-206ENST00000557958 RALGAPA2Q2PPJ7 1873 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 PSTPIP1O43586 416 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 RPS6KA5O75582 802 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 CD4P01730 458 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 GLI1P08151 1106 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 IBSPP21815 317 aaPredicted RBP17.84■□□□□ 0.45
LDLR-206ENST00000557958 PTK7Q13308 1070 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 STILQ15468 1287 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 TFAP2BQ92481 460 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 DDX47Q9H0S4 455 aaKnown RBP17.84■□□□□ 0.45
LDLR-206ENST00000557958 RECQL4O94761 1208 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 VDRP11473 427 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 SSTR3P32745 418 aaPredicted RBP17.84■□□□□ 0.45
LDLR-206ENST00000557958 CDH8P55286 799 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 DHX34Q14147 1143 aaKnown RBP17.84■□□□□ 0.45
LDLR-206ENST00000557958 TERF2Q15554 542 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 RHOT1Q8IXI2 618 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 APOL6Q9BWW8 343 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 MIS12Q9H081 205 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 RAB17Q9H0T7 212 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 NXF3Q9H4D5 531 aaKnown RBP17.84■□□□□ 0.45
LDLR-206ENST00000557958 WDR35Q9P2L0 1181 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 RASAL2Q9UJF2 1139 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 OGDHLQ9ULD0 1010 aa17.84■□□□□ 0.45
LDLR-206ENST00000557958 UTP11Q9Y3A2 253 aaKnown RBP17.84■□□□□ 0.45
LDLR-206ENST00000557958 CITO14578 2027 aa17.83■□□□□ 0.45
LDLR-206ENST00000557958 CHRNA3P32297 505 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 CETN2P41208 172 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 PLA2G4AP47712 749 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 MARCKSL1P49006 195 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 SMC1AQ14683 1233 aaKnown RBP17.83■□□□□ 0.44
LDLR-206ENST00000557958 SGO2Q562F6 1265 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 HSP90B2PQ58FF3 399 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 DCUN1D2Q6PH85 259 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 FAM228AQ86W67 206 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 SLC4A11Q8NBS3 891 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 C3orf20Q8ND61 904 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 ZNF333Q96JL9 665 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 ZNF560Q96MR9 790 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 NT5C1AQ9BXI3 368 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 SDCBP2Q9H190 292 aa17.83■□□□□ 0.44
LDLR-206ENST00000557958 MYBL2P10244 700 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 GHRP10912 638 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 ITGA4P13612 1032 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 PNPLA4P41247 253 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 GUCY2FP51841 1108 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 MRPS25P82663 173 aaKnown RBP17.82■□□□□ 0.44
LDLR-206ENST00000557958 ZBTB6Q15916 424 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 C2CD6Q53TS8 623 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 ZNF618Q5T7W0 954 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 ALKAL1Q6UXT8 129 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 HACE1Q8IYU2 909 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 WHAMMQ8TF30 809 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 IFT81Q8WYA0 676 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 CAVIN3Q969G5 261 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 HEXIM2Q96MH2 286 aaKnown RBP17.82■□□□□ 0.44
LDLR-206ENST00000557958 OSBPL7Q9BZF2 842 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 SYNCQ9H7C4 482 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 ST3GAL5Q9UNP4 418 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms