RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZFPM1Q8IX07 1006 aa8.7□□□□□ -1.02
NUP54-215ENST00000514313 CCDC150Q8NCX0 1101 aa8.7□□□□□ -1.02
NUP54-215ENST00000514313 ZNF384Q8TF68 577 aa8.7□□□□□ -1.02
NUP54-215ENST00000514313 ETAA1Q9NY74 926 aa8.7□□□□□ -1.02
NUP54-215ENST00000514313 CDYLQ9Y232 598 aa8.7□□□□□ -1.02
NUP54-215ENST00000514313 NPIPB6E9PJ23 425 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 H7C4K7 107 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 VPS4BO75351 444 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 CHN2P52757 468 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 BOP1Q14137 746 aaKnown RBP8.69□□□□□ -1.02
NUP54-215ENST00000514313 SLC29A2Q14542 456 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 TAF5Q15542 800 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 CRTC1Q6UUV9 634 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 ARHGEF18Q6ZSZ5 1173 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 PLEKHH3Q7Z736 793 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 ANKRD18AQ8IVF6 992 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 ELOA2Q8IYF1 753 aaPredicted RBP8.69□□□□□ -1.02
NUP54-215ENST00000514313 OR52N2Q8NGI0 321 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 PHACTR3Q96KR7 559 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 SNX27Q96L92 541 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 PPP1R9BQ96SB3 815 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 NELL2Q99435 816 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 TTYH3Q9C0H2 523 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 MEGF9Q9H1U4 602 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 SEC61A2Q9H9S3 476 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 USP40Q9NVE5 1235 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 POGKQ9P215 609 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 ZNF69Q9UC07 566 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 PGAP2Q9UHJ9 254 aa8.69□□□□□ -1.02
NUP54-215ENST00000514313 LOC102723971A0A1B0GUV8 181 aa8.68□□□□□ -1.02
NUP54-215ENST00000514313 DRGXA6NNA5 263 aa8.68□□□□□ -1.02
NUP54-215ENST00000514313 TOB1P50616 345 aaPredicted RBP8.68□□□□□ -1.02
NUP54-215ENST00000514313 GRM7Q14831 915 aa8.68□□□□□ -1.02
NUP54-215ENST00000514313 PLA1AQ53H76 456 aa8.68□□□□□ -1.02
NUP54-215ENST00000514313 GAS2L3Q86XJ1 694 aa8.68□□□□□ -1.02
NUP54-215ENST00000514313 TMEM151BQ8IW70 566 aa8.68□□□□□ -1.02
NUP54-215ENST00000514313 MB21D1Q8N884 522 aa8.68□□□□□ -1.02
NUP54-215ENST00000514313 TEX19Q8NA77 164 aa8.68□□□□□ -1.02
NUP54-215ENST00000514313 NUP133Q8WUM0 1156 aa8.68□□□□□ -1.02
NUP54-215ENST00000514313 ST8SIA2Q92186 375 aa8.68□□□□□ -1.02
NUP54-215ENST00000514313 SLC46A1Q96NT5 459 aa8.68□□□□□ -1.02
NUP54-215ENST00000514313 MESP1Q9BRJ9 268 aa8.68□□□□□ -1.02
NUP54-215ENST00000514313 IPO5O00410 1097 aaKnown RBP8.67□□□□□ -1.02
NUP54-215ENST00000514313 DCLK1O15075 740 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 KCNQ3O43525 872 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 ASNA1O43681 348 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 TRIM13O60858 407 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 ITGA5P08648 1049 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 CHRM3P20309 590 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 CPT1AP50416 773 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 PPP2CBP62714 309 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 PPP2CAP67775 309 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 ARHGEF7Q14155 803 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 ELAVL1Q15717 326 aaKnown RBP8.67□□□□□ -1.02
NUP54-215ENST00000514313 NT5DC1Q5TFE4 455 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 FCRL6Q6DN72 434 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 DRICH1Q6PGQ1 229 aaPredicted RBP8.67□□□□□ -1.02
NUP54-215ENST00000514313 CYP26C1Q6V0L0 522 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 KIAA0408Q6ZU52 694 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 RFX8Q6ZV50 586 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 LGI4Q8N135 537 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 CFAP52Q8N1V2 620 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 GALNT15Q8N3T1 639 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 STT3BQ8TCJ2 826 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 UBXN10Q96LJ8 280 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 OR14A2Q96R54 314 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 SCAF8Q9UPN6 1271 aaKnown RBP8.67□□□□□ -1.02
NUP54-215ENST00000514313 CLCA2Q9UQC9 943 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 ATP11BQ9Y2G3 1177 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 SH3BP1Q9Y3L3 701 aa8.67□□□□□ -1.02
NUP54-215ENST00000514313 LRRFIP2Q9Y608 721 aaKnown RBP8.67□□□□□ -1.02
NUP54-215ENST00000514313 POLRMTO00411 1230 aaKnown RBP8.66□□□□□ -1.02
NUP54-215ENST00000514313 NCAM2O15394 837 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 CCP110O43303 1012 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 INMTO95050 263 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 CKBP12277 381 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 XRCC6P12956 609 aaKnown RBP eCLIP8.66□□□□□ -1.02
NUP54-215ENST00000514313 IDEP14735 1019 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 EGR1P18146 543 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 HK1P19367 917 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 RPS19P39019 145 aaKnown RBP8.66□□□□□ -1.02
NUP54-215ENST00000514313 ARL4CP56559 192 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 TIGD6Q17RP2 521 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 PLAG1Q6DJT9 500 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 TAX1BP1Q86VP1 789 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 SYT12Q8IV01 421 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 NSUN7Q8NE18 718 aaKnown RBP8.66□□□□□ -1.02
NUP54-215ENST00000514313 MDGA1Q8NFP4 955 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 SLC38A3Q99624 504 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 SMOQ99835 787 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 EIF2AK1Q9BQI3 630 aaKnown RBP8.66□□□□□ -1.02
NUP54-215ENST00000514313 PCDHAC1Q9H158 963 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 TMEM8AQ9HCN3 771 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 VSX1Q9NZR4 365 aaPredicted RBP8.66□□□□□ -1.02
NUP54-215ENST00000514313 HECAQ9UBI9 543 aaPredicted RBP8.66□□□□□ -1.02
NUP54-215ENST00000514313 CAPN11Q9UMQ6 739 aa8.66□□□□□ -1.02
NUP54-215ENST00000514313 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.65□□□□□ -1.02
NUP54-215ENST00000514313 IRAK2O43187 625 aa8.65□□□□□ -1.02
NUP54-215ENST00000514313 IPO13O94829 963 aaKnown RBP8.65□□□□□ -1.02
NUP54-215ENST00000514313 INHBBP09529 407 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms