RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	VSTM1	Q6UX27	236 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	CNOT6L	Q96LI5	555 aa	Known RBP	11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	XYLT2	Q9H1B5	865 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	S1PR5	Q9H228	398 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	COMMD8	Q9NX08	183 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	USP15	Q9Y4E8	981 aa	Predicted RBP	11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	LINC01565	O15544	149 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	GNL1	P36915	607 aa	Predicted RBP	11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	NXPE3	Q969Y0	559 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	GZF1	Q9H116	711 aa	Predicted RBP	11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	CYP4F11	Q9HBI6	524 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	INSL5	Q9Y5Q6	135 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	TRIM49	P0CI25	452 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	TRIM49C	P0CI26	452 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	PMS1	P54277	932 aa	Known RBP	11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	STX17	P56962	302 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	SPATA2L	Q8IUW3	424 aa	Predicted RBP	11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	ADHFE1	Q8IWW8	467 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	B3GALT6	Q96L58	329 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	ZNF512	Q96ME7	567 aa	Predicted RBP	11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	GCNA	Q96QF7	691 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	BCO2	Q9BYV7	579 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	GPR88	Q9GZN0	384 aa		11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	UXT	Q9UBK9	157 aa	Predicted RBP	11.44	□□□□□ -0.58
UBR4-208	ENST00000459947	WDR27	A2RRH5	827 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	PTPN2	P17706	415 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	RFX1	P22670	979 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	ARPP19	P56211	112 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	MYL5	Q02045	173 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	PPP3CA	Q08209	521 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	CBX2	Q14781	532 aa	Predicted RBP	11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	SOWAHA	Q2M3V2	549 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	DPCR1	Q3MIW9	517 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	C1orf220	Q5T0J3	134 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	OR6B3	Q8NGW1	331 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	ELOVL4	Q9GZR5	314 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	KIAA1257	Q9ULG3	409 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	CLUH	O75153	1309 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	SCN1A	P35498	2009 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	PLXNA3	P51805	1871 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	MTMR11	A4FU01	709 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	VNN1	O95497	513 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	NXF1	Q9UBU9	619 aa	Known RBP	11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	TRIM66	O15016	1216 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	RPL17	P18621	184 aa	Known RBP	11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	TYRO3	Q06418	890 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	INCA1	Q0VD86	236 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	STIL	Q15468	1287 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	CFAP221	Q4G0U5	840 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	CAVIN1	Q6NZI2	390 aa	Known RBP	11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	GBP6	Q6ZN66	633 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	SLC7A14	Q8TBB6	771 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947	YIPF1	Q9Y548	306 aa		11.43	□□□□□ -0.58
UBR4-208	ENST00000459947		A8MXQ7	604 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	ANXA13	P27216	316 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	DLG4	P78352	724 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	CYP4A22	Q5TCH4	519 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	ZDHHC14	Q8IZN3	488 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	TDRD5	Q8NAT2	981 aa	Known RBP	11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	WDR6	Q9NNW5	1121 aa	Known RBP	11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	CCDC195	A0A1B0GUA6	201 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	CSH1	P0DML2	217 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	CSH2	P0DML3	217 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	HAPLN1	P10915	354 aa	Predicted RBP	11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	PFKL	P17858	780 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	GTF2F1	P35269	517 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	PDE6C	P51160	858 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	TAF12	Q16514	161 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	SLC39A12	Q504Y0	691 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	MYCBPAP	Q8TBZ2	947 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	TAS1R2	Q8TE23	839 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	TIMM13	Q9Y5L4	95 aa	Predicted RBP	11.42	□□□□□ -0.58
UBR4-208	ENST00000459947		H3BQ06	376 aa	Predicted RBP	11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	CST3	P01034	146 aa	Predicted RBP	11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	KCNH2	Q12809	1159 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	FAM171B	Q6P995	826 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	NT5C1A	Q9BXI3	368 aa		11.42	□□□□□ -0.58
UBR4-208	ENST00000459947	DDX6	P26196	483 aa	Known RBP eCLIP	11.41	□□□□□ -0.58	4e-18	■□□□□ 9.5
UBR4-208	ENST00000459947	ADCY1	Q08828	1119 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	FKBP15	Q5T1M5	1219 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	FMNL3	Q8IVF7	1028 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	GLYCTK	Q8IVS8	523 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	CRYBG2	Q8N1P7	616 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	EHBP1	Q8NDI1	1231 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	BMP1	P13497	986 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	CDC25C	P30307	473 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	PPP3CC	P48454	512 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	GCNT1	Q02742	428 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	ARHGAP15	Q53QZ3	475 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	KBTBD7	Q8WVZ9	684 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	E2F7	Q96AV8	911 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	ANP32E	Q9BTT0	268 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	MMRN2	Q9H8L6	949 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	ASAH2	Q9NR71	780 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	ADAM12	O43184	909 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	PTPN1	P18031	435 aa	Known RBP	11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	SLC8A3	P57103	927 aa		11.41	□□□□□ -0.58
UBR4-208	ENST00000459947	OSTM1	Q86WC4	334 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 179.6 ms