RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 CENPCQ03188 943 aa28.51■■■□□ 2.15
MSX1-201ENST00000382723 DENND1BQ6P3S1 775 aa28.51■■■□□ 2.15
MSX1-201ENST00000382723 LIN28BQ6ZN17 250 aaKnown RBP eCLIP28.51■■■□□ 2.15
MSX1-201ENST00000382723 UNC93AQ86WB7 457 aa28.51■■■□□ 2.15
MSX1-201ENST00000382723 KIAA0355O15063 1070 aa28.5■■■□□ 2.15
MSX1-201ENST00000382723 CSF2RAP15509 400 aa28.5■■■□□ 2.15
MSX1-201ENST00000382723 TIGD5Q53EQ6 642 aa28.5■■■□□ 2.15
MSX1-201ENST00000382723 C2CD6Q53TS8 623 aa28.5■■■□□ 2.15
MSX1-201ENST00000382723 C1orf131Q8NDD1 294 aaKnown RBP28.5■■■□□ 2.15
MSX1-201ENST00000382723 TRIM58Q8NG06 486 aa28.5■■■□□ 2.15
MSX1-201ENST00000382723 SLC35G2Q8TBE7 412 aa28.5■■■□□ 2.15
MSX1-201ENST00000382723 RFFLQ8WZ73 363 aa28.5■■■□□ 2.15
MSX1-201ENST00000382723 ZNF653Q96CK0 615 aa28.5■■■□□ 2.15
MSX1-201ENST00000382723 FAM193BQ96PV7 902 aaPredicted RBP28.5■■■□□ 2.15
MSX1-201ENST00000382723 ALS2CR12Q96Q35 445 aa28.5■■■□□ 2.15
MSX1-201ENST00000382723 LPIN3Q9BQK8 851 aa28.5■■■□□ 2.15
MSX1-201ENST00000382723 TIMM13Q9Y5L4 95 aaPredicted RBP28.5■■■□□ 2.15
MSX1-201ENST00000382723 NCANO14594 1321 aa28.5■■■□□ 2.15
MSX1-201ENST00000382723 F8W810 466 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 OSTM1Q86WC4 334 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 CASD1Q96PB1 797 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 OSGEPQ9NPF4 335 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 CEP83Q9Y592 693 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 A0A0A6YYK5 440 aaPredicted RBP28.49■■■□□ 2.15
MSX1-201ENST00000382723 UPP2O95045 317 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 LSM8O95777 96 aaKnown RBP28.49■■■□□ 2.15
MSX1-201ENST00000382723 WARSP23381 471 aaKnown RBP28.49■■■□□ 2.15
MSX1-201ENST00000382723 BRCC3P46736 316 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 DSC1Q08554 894 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 DCLRE1AQ6PJP8 1040 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 MCOLN2Q8IZK6 566 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 TMEM35BQ8NCS4 154 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 FAM49BQ9NUQ9 324 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 DNAJB4Q9UDY4 337 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 KIAA1257Q9ULG3 409 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 STXBP5LQ9Y2K9 1186 aa28.49■■■□□ 2.15
MSX1-201ENST00000382723 CTAGE9A4FU28 777 aa28.48■■■□□ 2.15
MSX1-201ENST00000382723 MICAL2O94851 1124 aa28.48■■■□□ 2.15
MSX1-201ENST00000382723 KIF4AO95239 1232 aa28.48■■■□□ 2.15
MSX1-201ENST00000382723 ITGB1P05556 798 aa28.48■■■□□ 2.15
MSX1-201ENST00000382723 OR1G1P47890 313 aa28.48■■■□□ 2.15
MSX1-201ENST00000382723 CD300LGQ6UXG3 332 aa28.48■■■□□ 2.15
MSX1-201ENST00000382723 PHLDB2Q86SQ0 1253 aa28.48■■■□□ 2.15
MSX1-201ENST00000382723 NPAS4Q8IUM7 802 aa28.48■■■□□ 2.15
MSX1-201ENST00000382723 COLGALT2Q8IYK4 626 aa28.48■■■□□ 2.15
MSX1-201ENST00000382723 CRIPAKQ8N1N5 446 aa28.48■■■□□ 2.15
MSX1-201ENST00000382723 C11orf70Q9BRQ4 267 aa28.48■■■□□ 2.15
MSX1-201ENST00000382723 CTTNBP2NLQ9P2B4 639 aa28.48■■■□□ 2.15
MSX1-201ENST00000382723 WDR3Q9UNX4 943 aaKnown RBP eCLIP28.48■■■□□ 2.15
MSX1-201ENST00000382723 TDRD15B5MCY1 1934 aaKnown RBP28.48■■■□□ 2.15
MSX1-201ENST00000382723 O00370 1275 aa28.47■■■□□ 2.15
MSX1-201ENST00000382723 ENC1O14682 589 aa28.47■■■□□ 2.15
MSX1-201ENST00000382723 PALMO75781 387 aa28.47■■■□□ 2.15
MSX1-201ENST00000382723 AARSP49588 968 aaKnown RBP eCLIP28.47■■■□□ 2.15
MSX1-201ENST00000382723 CNGA2Q16280 664 aa28.47■■■□□ 2.15
MSX1-201ENST00000382723 UBE2Q1Q7Z7E8 422 aa28.47■■■□□ 2.15
MSX1-201ENST00000382723 WDTC1Q8N5D0 677 aa28.47■■■□□ 2.15
MSX1-201ENST00000382723 NAPGQ99747 312 aaPredicted RBP28.47■■■□□ 2.15
MSX1-201ENST00000382723 M0QYV0 167 aa28.47■■■□□ 2.15
MSX1-201ENST00000382723 HOXA2O43364 376 aa28.47■■■□□ 2.15
MSX1-201ENST00000382723 MMS22LQ6ZRQ5 1243 aa28.47■■■□□ 2.15
MSX1-201ENST00000382723 MON1BQ7L1V2 547 aa28.47■■■□□ 2.15
MSX1-201ENST00000382723 ADAM22Q9P0K1 906 aa28.47■■■□□ 2.15
MSX1-201ENST00000382723 CNOT8Q9UFF9 292 aaKnown RBP28.47■■■□□ 2.15
MSX1-201ENST00000382723 TBKBP1A7MCY6 615 aa28.46■■■□□ 2.15
MSX1-201ENST00000382723 URI1O94763 535 aaPredicted RBP28.46■■■□□ 2.15
MSX1-201ENST00000382723 IFI16Q16666 785 aaKnown RBP28.46■■■□□ 2.15
MSX1-201ENST00000382723 PPP1R26Q5T8A7 1209 aaPredicted RBP28.46■■■□□ 2.15
MSX1-201ENST00000382723 MFSD5Q6N075 450 aa28.46■■■□□ 2.15
MSX1-201ENST00000382723 UBA3Q8TBC4 463 aa28.46■■■□□ 2.15
MSX1-201ENST00000382723 GTF3C4Q9UKN8 822 aa28.46■■■□□ 2.15
MSX1-201ENST00000382723 TSPAN16Q9UKR8 245 aa28.46■■■□□ 2.15
MSX1-201ENST00000382723 COG5Q9UP83 839 aa28.46■■■□□ 2.15
MSX1-201ENST00000382723 PRG3Q9Y2Y8 225 aaPredicted RBP28.46■■■□□ 2.15
MSX1-201ENST00000382723 GRID2IPA4D2P6 1211 aa28.45■■■□□ 2.15
MSX1-201ENST00000382723 ODC1P11926 461 aa28.45■■■□□ 2.15
MSX1-201ENST00000382723 ACAT1P24752 427 aaKnown RBP28.45■■■□□ 2.15
MSX1-201ENST00000382723 PHF13Q86YI8 300 aaPredicted RBP28.45■■■□□ 2.15
MSX1-201ENST00000382723 RHOT2Q8IXI1 618 aa28.45■■■□□ 2.15
MSX1-201ENST00000382723 TMEM199Q8N511 208 aa28.45■■■□□ 2.15
MSX1-201ENST00000382723 TPCN2Q8NHX9 752 aa28.45■■■□□ 2.15
MSX1-201ENST00000382723 ZNF518BQ9C0D4 1074 aa28.45■■■□□ 2.15
MSX1-201ENST00000382723 LHX5Q9H2C1 402 aa28.45■■■□□ 2.15
MSX1-201ENST00000382723 CYP1A2P05177 515 aa28.45■■■□□ 2.14
MSX1-201ENST00000382723 CDH5P33151 784 aaPredicted RBP28.45■■■□□ 2.14
MSX1-201ENST00000382723 PSMC1P62191 440 aaKnown RBP28.45■■■□□ 2.14
MSX1-201ENST00000382723 GOLGA7BQ2TAP0 167 aa28.45■■■□□ 2.14
MSX1-201ENST00000382723 LLGL2Q6P1M3 1020 aa28.45■■■□□ 2.14
MSX1-201ENST00000382723 CRYBG2Q8N1P7 616 aa28.45■■■□□ 2.14
MSX1-201ENST00000382723 TMEM86AQ8N2M4 240 aa28.45■■■□□ 2.14
MSX1-201ENST00000382723 RSPH1Q8WYR4 309 aa28.45■■■□□ 2.14
MSX1-201ENST00000382723 TRIM11Q96F44 468 aa28.45■■■□□ 2.14
MSX1-201ENST00000382723 RNF216Q9NWF9 866 aaPredicted RBP28.45■■■□□ 2.14
MSX1-201ENST00000382723 DDX43Q9NXZ2 648 aaKnown RBP28.45■■■□□ 2.14
MSX1-201ENST00000382723 HCSTQ9UBK5 93 aa28.45■■■□□ 2.14
MSX1-201ENST00000382723 PCDHGC5Q9Y5F6 944 aa28.45■■■□□ 2.14
MSX1-201ENST00000382723 GABRDO14764 452 aa28.44■■■□□ 2.14
MSX1-201ENST00000382723 ACRP10323 421 aa28.44■■■□□ 2.14
MSX1-201ENST00000382723 RRM1P23921 792 aa28.44■■■□□ 2.14
MSX1-201ENST00000382723 LCLAT1Q6UWP7 414 aa28.44■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms