RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CLSTN2Q9H4D0 955 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 KIAA1468Q9P260 1216 aa13.96□□□□□ -0.17
CLK3-224ENST00000568605 ANAPC1Q9H1A4 1944 aa13.96□□□□□ -0.18
CLK3-224ENST00000568605 CLUHO75153 1309 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 BIN1O00499 593 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 DLL1O00548 723 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 RFPL2O75678 378 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 AKAP3O75969 853 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 PAPLNO95428 1278 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 STAU1O95793 577 aaKnown RBP13.95□□□□□ -0.18
CLK3-224ENST00000568605 P4HA1P13674 534 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 LHX1P48742 406 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 VAMP7P51809 220 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 SMARCB1Q12824 385 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 PAK1Q13153 545 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 ZNF699Q32M78 642 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 WSCD1Q658N2 575 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 ISM2Q6H9L7 571 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 KLHL10Q6JEL2 608 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 RSPO2Q6UXX9 243 aaPredicted RBP13.95□□□□□ -0.18
CLK3-224ENST00000568605 TCEAL8Q8IYN2 117 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 DCP1BQ8IZD4 617 aaKnown RBP13.95□□□□□ -0.18
CLK3-224ENST00000568605 ADGRF2Q8IZF7 708 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 GJD3Q8N144 294 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 TDRD5Q8NAT2 981 aaKnown RBP13.95□□□□□ -0.18
CLK3-224ENST00000568605 CCDC150Q8NCX0 1101 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 CXorf38Q8TB03 319 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 C2orf15Q8WU43 125 aaKnown RBP13.95□□□□□ -0.18
CLK3-224ENST00000568605 ACSF2Q96CM8 615 aaPredicted RBP13.95□□□□□ -0.18
CLK3-224ENST00000568605 FAM84AQ96KN4 292 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 NECAB3Q96P71 396 aaPredicted RBP13.95□□□□□ -0.18
CLK3-224ENST00000568605 POMKQ9H5K3 350 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 CYP4F11Q9HBI6 524 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 LMBRD1Q9NUN5 540 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 CTNND2Q9UQB3 1225 aa13.95□□□□□ -0.18
CLK3-224ENST00000568605 TNFRSF10AO00220 468 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 MBD3O95983 291 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 PCSK1P29120 753 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 PIK3CAP42336 1068 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 ADCY1Q08828 1119 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 GPR17Q13304 367 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 NCOA4Q13772 614 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 ZNF667Q5HYK9 610 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 TDRD10Q5VZ19 366 aaKnown RBP13.94□□□□□ -0.18
CLK3-224ENST00000568605 PDCL2Q8N4E4 241 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 BORCS6Q96GS4 357 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 RPGRIP1Q96KN7 1286 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 CEP63Q96MT8 703 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 MMS19Q96T76 1030 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 DDX43Q9NXZ2 648 aaKnown RBP13.94□□□□□ -0.18
CLK3-224ENST00000568605 HSFX1Q9UBD0 423 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 DACH1Q9UI36 760 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 L1RE1Q9UN81 338 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 POLIQ9UNA4 740 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 USTQ9Y2C2 406 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 INSL5Q9Y5Q6 135 aa13.94□□□□□ -0.18
CLK3-224ENST00000568605 TRIM49BA6NDI0 452 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 CCL16O15467 120 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 FGFR1OPO95684 399 aaKnown RBP13.93□□□□□ -0.18
CLK3-224ENST00000568605 WEE2P0C1S8 567 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 TRIM21P19474 475 aaKnown RBP13.93□□□□□ -0.18
CLK3-224ENST00000568605 GTF2H1P32780 548 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 NFE2Q16621 373 aaPredicted RBP13.93□□□□□ -0.18
CLK3-224ENST00000568605 WDR72Q3MJ13 1102 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 ZACNQ401N2 412 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 TCERG1LQ5VWI1 586 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 ANKRD40Q6AI12 368 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 OTOP3Q7RTS5 596 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 ZC3H3Q8IXZ2 948 aaKnown RBP13.93□□□□□ -0.18
CLK3-224ENST00000568605 OR10T2Q8NGX3 314 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 SPPL2BQ8TCT7 592 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 PLEKHO2Q8TD55 490 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 NELFBQ8WX92 580 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 TAF4BQ92750 862 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 ZNF707Q96C28 371 aaPredicted RBP13.93□□□□□ -0.18
CLK3-224ENST00000568605 ZCWPW1Q9H0M4 648 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 GZF1Q9H116 711 aaPredicted RBP13.93□□□□□ -0.18
CLK3-224ENST00000568605 VRTNQ9H8Y1 702 aa13.93□□□□□ -0.18
CLK3-224ENST00000568605 METTL14Q9HCE5 456 aaKnown RBP13.93□□□□□ -0.18
CLK3-224ENST00000568605 WDR6Q9NNW5 1121 aaKnown RBP13.93□□□□□ -0.18
CLK3-224ENST00000568605 VCANP13611 3396 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 MTMR11A4FU01 709 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 C19orf67A6NJJ6 358 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 LOC730098B7Z3J9 87 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 OR4Q2P0C623 313 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 TRIM49P0CI25 452 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 TRIM49CP0CI26 452 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 MXI1P50539 228 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 DLG4P78352 724 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 MAPRE1Q15691 268 aaKnown RBP13.92□□□□□ -0.18
CLK3-224ENST00000568605 SGSM1Q2NKQ1 1148 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 CCDC40Q4G0X9 1142 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 SLC39A12Q504Y0 691 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 DCAF17Q5H9S7 520 aaPredicted RBP13.92□□□□□ -0.18
CLK3-224ENST00000568605 KRT39Q6A163 491 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 IQCEQ6IPM2 695 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 RNF19BQ6ZMZ0 732 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 PLCD3Q8N3E9 789 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 MLKLQ8NB16 471 aa13.92□□□□□ -0.18
CLK3-224ENST00000568605 LEMD2Q8NC56 503 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms