RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CPXCR1Q8N123 301 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 MAML1Q92585 1016 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 CCDC124Q96CT7 223 aaKnown RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ERP27Q96DN0 273 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 RUNDC3BQ96NL0 473 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 FNBP1Q96RU3 617 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 BHLHE41Q9C0J9 482 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ARHGAP20Q9P2F6 1191 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 POLR3KQ9Y2Y1 108 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ASTN2O75129 1339 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 GOLGA8IPA6NC78 632 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 GOLGA8JA6NMD2 632 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 PLA2G4BP0C869 781 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 CD19P15391 556 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 SELPP16109 830 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 MAN1A1P33908 653 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 GSTO1P78417 241 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 CDC37Q16543 378 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 SYCP2LQ5T4T6 812 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ARL6IP4Q66PJ3 421 aaKnown RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ISLR2Q6UXK2 745 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 KIAA0907Q7Z7F0 614 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ARHGAP24Q8N264 748 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ANKRD35Q8N283 1001 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 MMGT1Q8N4V1 131 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 CCDC89Q8N998 374 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 TTC17Q96AE7 1141 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 MIEF2Q96C03 454 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 ZC3H12CQ9C0D7 883 aaKnown RBP5.81□□□□□ -1.48
LIMA1-203ENST00000547825 CEP44Q9C0F1 390 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 NT5C3AQ9H0P0 336 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 BHMT2Q9H2M3 363 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 TXLNGQ9NUQ3 528 aa5.81□□□□□ -1.48
LIMA1-203ENST00000547825 CCDC188H7C350 402 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 UBOX5O94941 541 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 UBTFL6P0CB48 400 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ZCCHC18P0CG32 403 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 FAM157BP0CG42 384 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 TRIM49P0CI25 452 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 TRIM49CP0CI26 452 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ARL1P40616 181 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 CTCFP49711 727 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 EPHB1P54762 984 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ADCY2Q08462 1091 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 HYAL2Q12891 473 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 DBN1Q16643 649 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 KYNUQ16719 465 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PPP4R3AQ6IN85 833 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PDXDC1Q6P996 788 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 GJB7Q6PEY0 223 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 SPICE1Q8N0Z3 855 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 C4orf32Q8N8J7 132 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 KLF6Q99612 283 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 SH2D3AQ9BRG2 576 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ZCWPW1Q9H0M4 648 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 RIC8AQ9NPQ8 531 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 FAF1Q9UNN5 650 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PCDHA1Q9Y5I3 950 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 MAPK13O15264 365 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PPIP5K2O43314 1243 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 STAT3P40763 770 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 CPA2P48052 419 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 YWHAGP61981 247 aaKnown RBP eCLIP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 IRX1P78414 480 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PLAURQ03405 335 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 COL9A2Q14055 689 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 CRYMQ14894 314 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 MTERF2Q49AM1 385 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 THEMIS2Q5TEJ8 643 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 WDR78Q5VTH9 848 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ARMC3Q5W041 872 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 CIAPIN1Q6FI81 312 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 CCDC137Q6PK04 289 aaKnown RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 EPM2AIP1Q7L775 607 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 SPATA21Q7Z572 469 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 CREG2Q8IUH2 290 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 C4orf33Q8N1A6 199 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ANKS1AQ92625 1134 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 HOOK2Q96ED9 719 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 TTYH3Q9C0H2 523 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 TMEM39AQ9NV64 488 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 DNAJC12Q9UKB3 198 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PCDHB14Q9Y5E9 798 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 LAMA3Q16787 3333 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 TMEM120BA0PK00 339 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 IQCA1LA6NCM1 817 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ZNF233A6NK53 670 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PPFIA2O75334 1257 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 CILPO75339 1184 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 TNNI1P19237 187 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 SAT1P21673 171 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 SOX18P35713 384 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 STRN3Q13033 797 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 DNAJC3Q13217 504 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 BYSLQ13895 437 aaKnown RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PLEKHG6Q3KR16 790 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 BBS9Q3SYG4 887 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 144.1 ms