RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 UQCRBP14927 111 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 CD58P19256 250 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 RFC4P35249 363 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 NCKAP1LP55160 1127 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 OTUD4Q01804 1114 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 LRRC63Q05C16 580 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 ACVR2BQ13705 512 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 TGFBIQ15582 683 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 CBWD6Q4V339 395 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 SLC45A4Q5BKX6 768 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 CBWD3Q5JTY5 395 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 CBWD5Q5RIA9 395 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 RNF19BQ6ZMZ0 732 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 TMC7Q7Z402 723 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 PDSS2Q86YH6 399 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 CCDC110Q8TBZ0 833 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 HELQQ8TDG4 1101 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 ACTRT2Q8TDY3 377 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 RAD54LQ92698 747 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 PIGSQ96S52 555 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 ORAI2Q96SN7 254 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 MPHOSPH6Q99547 160 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 SENP7Q9BQF6 1050 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 TRIM55Q9BYV6 548 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 DRC3Q9H069 523 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 CAAP1Q9H8G2 361 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 PCDH12Q9NPG4 1184 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 MCM9Q9NXL9 1143 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 RRN3Q9NYV6 651 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 K7EPI3 171 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 PODXLO00592 558 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 CFLARO15519 480 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 CIAO1O76071 339 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 PSMC1P62191 440 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 GPSM2P81274 684 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 TFDP1Q14186 410 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 OASLQ15646 514 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 PDK4Q16654 411 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 CYP2A13Q16696 494 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 TRIML2Q8N7C3 387 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 UBL4BQ8N7F7 174 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 STKLD1Q8NE28 680 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 ZSWIM2Q8NEG5 633 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 ZSCAN18Q8TBC5 510 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 FNDC8Q8TC99 324 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 DNAJC19Q96DA6 116 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 PRICKLE1Q96MT3 831 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 RUNDC3BQ96NL0 473 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 ZSWIM1Q9BR11 485 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 ROPN1BQ9BZX4 212 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 CEP44Q9C0F1 390 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 ROPN1Q9HAT0 212 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 SIX2Q9NPC8 291 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 UBE2TQ9NPD8 197 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 IL17RBQ9NRM6 502 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 EURLQ9NYK6 297 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 EBF1Q9UH73 591 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 WDR37Q9Y2I8 494 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 CROCCQ5TZA2 2017 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 RTL9Q8NET4 1388 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 F7P08709 466 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 SRGAP2CP0DJJ0 459 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 SRGAP2BP0DMP2 458 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 BMP3P12645 472 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 ZFXP17010 805 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 RGS2P41220 211 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 TRAPPC10P48553 1259 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 CD97P48960 835 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 GEMIN4P57678 1058 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 PRAMEP78395 509 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 HSF5Q4G112 596 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 VWA5B1Q5TIE3 1220 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 THOC7Q6I9Y2 204 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 TRMT10CQ7L0Y3 403 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 ANKS1BQ7Z6G8 1248 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 USP37Q86T82 979 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 SFR1Q86XK3 245 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 DENND1AQ8TEH3 1009 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 GRAMD1AQ96CP6 724 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 OXNAD1Q96HP4 312 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 MAELQ96JY0 434 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 RUSC1Q9BVN2 902 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 APOL6Q9BWW8 343 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 XAB2Q9HCS7 855 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 MTUS1Q9ULD2 1270 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 COQ6Q9Y2Z9 468 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 NOX1Q9Y5S8 564 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 USP34Q70CQ2 3546 aa7.62□□□□□ -1.19
LIMCH1-207ENST00000508466 C2CD2LO14523 706 aa7.62□□□□□ -1.19
LIMCH1-207ENST00000508466 CSPG5O95196 566 aa7.62□□□□□ -1.19
LIMCH1-207ENST00000508466 GCNT3O95395 438 aa7.62□□□□□ -1.19
LIMCH1-207ENST00000508466 SGPL1O95470 568 aa7.62□□□□□ -1.19
LIMCH1-207ENST00000508466 AKR1B1P15121 316 aa7.62□□□□□ -1.19
LIMCH1-207ENST00000508466 PHKG2P15735 406 aa7.62□□□□□ -1.19
LIMCH1-207ENST00000508466 KCNA6P17658 529 aa7.62□□□□□ -1.19
LIMCH1-207ENST00000508466 CALML3P27482 149 aa7.62□□□□□ -1.19
LIMCH1-207ENST00000508466 ATP5DP30049 168 aa7.62□□□□□ -1.19
LIMCH1-207ENST00000508466 NMT1P30419 496 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-207ENST00000508466 HOXD13P35453 343 aa7.62□□□□□ -1.19
LIMCH1-207ENST00000508466 SOX11P35716 441 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms