RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 DEFB118Q96PH6 123 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 PCDHB18PQ96TA0 734 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 RNF208Q9H0X6 261 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 SALL4Q9UJQ4 1053 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 GTF3C4Q9UKN8 822 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 POLIQ9UNA4 740 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 PALMO75781 387 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 CENPCQ03188 943 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 HSP90B2PQ58FF3 399 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 C9orf57Q5W0N0 161 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 ZNF771Q7L3S4 317 aaPredicted RBP19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 COG1Q8WTW3 980 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 ZNF606Q8WXB4 792 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 TRPV6Q9H1D0 765 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 AGO3Q9H9G7 860 aaKnown RBP19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 PSD3Q9NYI0 1048 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 KLK14Q9P0G3 267 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 CTTNBP2NLQ9P2B4 639 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 UVRAGQ9P2Y5 699 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 OGDHLQ9ULD0 1010 aa19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 BARX2Q9UMQ3 279 aaPredicted RBP19.36■□□□□ 0.69
CCDC88C-203ENST00000389856 CILPO75339 1184 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 CYP1A1P04798 512 aaPredicted RBP19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 UNGP13051 313 aaPredicted RBP19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 PAX3P23760 479 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 AARSP49588 968 aaKnown RBP eCLIP19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 TAF6P49848 677 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 INCA1Q0VD86 236 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 STILQ15468 1287 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 GLRA4Q5JXX5 417 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 PALB2Q86YC2 1186 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 TMEM35BQ8NCS4 154 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 TPCN2Q8NHX9 752 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 SLC35G2Q8TBE7 412 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 FAM71BQ8TC56 605 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 ZNF653Q96CK0 615 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 PBKQ96KB5 322 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 FTHL17Q9BXU8 183 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 THAP2Q9H0W7 228 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 ACP6Q9NPH0 428 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 TAS2R14Q9NYV8 317 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 TUBGCP4Q9UGJ1 667 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 PCDHGC3Q9UN70 934 aa19.35■□□□□ 0.69
CCDC88C-203ENST00000389856 A0A0U1RQF3 1178 aa19.34■□□□□ 0.69
CCDC88C-203ENST00000389856 PIRO00625 290 aa19.34■□□□□ 0.69
CCDC88C-203ENST00000389856 CD19P15391 556 aa19.34■□□□□ 0.69
CCDC88C-203ENST00000389856 SELPP16109 830 aa19.34■□□□□ 0.69
CCDC88C-203ENST00000389856 GUCY2FP51841 1108 aa19.34■□□□□ 0.69
CCDC88C-203ENST00000389856 DSC3Q14574 896 aa19.34■□□□□ 0.69
CCDC88C-203ENST00000389856 RNF39Q9H2S5 420 aa19.34■□□□□ 0.69
CCDC88C-203ENST00000389856 SMYD3Q9H7B4 428 aa19.34■□□□□ 0.69
CCDC88C-203ENST00000389856 AVENQ9NQS1 362 aaPredicted RBP19.34■□□□□ 0.69
CCDC88C-203ENST00000389856 MYH10P35580 1976 aa19.34■□□□□ 0.69
CCDC88C-203ENST00000389856 MTA2O94776 668 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 CYP1A2P05177 515 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 THP07101 528 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 FAM163BP0C2L3 166 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 LRPAP1P30533 357 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 CDK7P50613 346 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 C2orf54Q08AI8 447 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 UNC93AQ86WB7 457 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 EXOC4Q96A65 974 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 C18orf25Q96B23 403 aaPredicted RBP19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 TMEM176AQ96HP8 235 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 NT5C1AQ9BXI3 368 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 ZMYND15Q9H091 742 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 LCMT1Q9UIC8 334 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 SNX9Q9Y5X1 595 aa19.33■□□□□ 0.69
CCDC88C-203ENST00000389856 CALB1P05937 261 aa19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 VDRP11473 427 aa19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 C1QBPQ07021 282 aaKnown RBP19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 NAA35Q5VZE5 725 aa19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 C11orf63Q6NUN7 778 aa19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 LRRC8DQ7L1W4 858 aa19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 PEX26Q7Z412 305 aa19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 DAAM2Q86T65 1068 aa19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 PHF13Q86YI8 300 aaPredicted RBP19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 PPP1R10Q96QC0 940 aaKnown RBP19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 ADAM2Q99965 735 aa19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 MRPL47Q9HD33 250 aaKnown RBP19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 GDAP2Q9NXN4 497 aa19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 CNOT8Q9UFF9 292 aaKnown RBP19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 SCINQ9Y6U3 715 aa19.33■□□□□ 0.68
CCDC88C-203ENST00000389856 PITPNM1O00562 1244 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 PARNO95453 639 aaKnown RBP19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 RPL9P32969 192 aaKnown RBP19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 RAP1GAPP47736 663 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 RAD23BP54727 409 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 NOMO3P69849 1222 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 NNTQ13423 1086 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 RPS6KA1Q15418 735 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 ZNF394Q53GI3 561 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 SGO2Q562F6 1265 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 DPH6Q7L8W6 267 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 CTU1Q7Z7A3 348 aaKnown RBP19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 SLFN11Q7Z7L1 901 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 FAM126BQ8IXS8 530 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 MCOLN2Q8IZK6 566 aa19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.32■□□□□ 0.68
CCDC88C-203ENST00000389856 SELENOOQ9BVL4 669 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms