RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 PCIF1Q9H4Z3 704 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 SAYSD1Q9NPB0 183 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 GJB4Q9NTQ9 266 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 MYO1AQ9UBC5 1043 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 LIMCH1Q9UPQ0 1083 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 BACE2Q9Y5Z0 518 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 PASKQ96RG2 1323 aa6.92□□□□□ -1.3
VPS29-210ENST00000552130 SYNJ2BP-COX16A0A087WUM0 186 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 LRRC14BA6NHZ5 514 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 F8W031 263 aaPredicted RBP6.91□□□□□ -1.3
VPS29-210ENST00000552130 SRGAP2O75044 1071 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 CYP17A1P05093 508 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 CELA3BP08861 270 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 MTHFD2P13995 350 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 VIPR1P32241 457 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 PRPHP41219 470 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 STAT5AP42229 794 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 KIR2DL1P43626 348 aaPredicted RBP6.91□□□□□ -1.3
VPS29-210ENST00000552130 KIR2DL2P43627 348 aaPredicted RBP6.91□□□□□ -1.3
VPS29-210ENST00000552130 MAP2K6P52564 334 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 POLR2FP61218 127 aaKnown RBP6.91□□□□□ -1.3
VPS29-210ENST00000552130 IL1RL1Q01638 556 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 FMO1Q01740 532 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 LRRC74AQ0VAA2 488 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 EIF4A2Q14240 407 aaKnown RBP6.91□□□□□ -1.3
VPS29-210ENST00000552130 CNGA2Q16280 664 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 ATP2B3Q16720 1220 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS29-210ENST00000552130 C1orf141Q5JVX7 400 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 SLC9C2Q5TAH2 1124 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 MBNL2Q5VZF2 373 aaKnown RBP6.91□□□□□ -1.3
VPS29-210ENST00000552130 C16orf87Q6PH81 154 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 RNF111Q6ZNA4 994 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 C16orf59Q7L2K0 433 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 SESTD1Q86VW0 696 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 FIBCD1Q8N539 461 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 ATP11CQ8NB49 1132 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 FANCBQ8NB91 859 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 IL31RAQ8NI17 732 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 FEZF2Q8TBJ5 459 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 FAM71BQ8TC56 605 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 SYTL5Q8TDW5 730 aaPredicted RBP6.91□□□□□ -1.3
VPS29-210ENST00000552130 ZDHHC15Q96MV8 337 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 FSD1Q9BTV5 496 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 HDAC8Q9BY41 377 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 ARMT1Q9H993 441 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 KCTD5Q9NXV2 234 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 SH3BGRL2Q9UJC5 107 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 COG5Q9UP83 839 aa6.91□□□□□ -1.3
VPS29-210ENST00000552130 SLC12A8A0AV02 714 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 ISM1B1AKI9 464 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 GTPBP1O00178 669 aaKnown RBP6.9□□□□□ -1.3
VPS29-210ENST00000552130 NDC80O14777 642 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 MEFVO15553 781 aaPredicted RBP6.9□□□□□ -1.3
VPS29-210ENST00000552130 MTSS1O43312 755 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 HTRA2O43464 458 aaPredicted RBP6.9□□□□□ -1.3
VPS29-210ENST00000552130 USP2O75604 605 aaPredicted RBP6.9□□□□□ -1.3
VPS29-210ENST00000552130 DGKIO75912 1065 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 MLYCDO95822 493 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 SCGB1D1O95968 90 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 ADRB1P08588 477 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 SRGAP2BP0DMP2 458 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 ACADMP11310 421 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 KRT13P13646 458 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 RPS2P15880 293 aaKnown RBP6.9□□□□□ -1.3
VPS29-210ENST00000552130 FGFR2P21802 821 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 EDNRBP24530 442 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 CD40P25942 277 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 MAPK4P31152 587 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 MCM2P49736 904 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 ALDH3A2P51648 485 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 CCR9P51686 369 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 IRF9Q00978 393 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 AKAP17AQ02040 695 aaKnown RBP6.9□□□□□ -1.3
VPS29-210ENST00000552130 TFCP2Q12800 502 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 MAP3K12Q12852 859 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 LRMPQ12912 555 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 SLC12A1Q13621 1099 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 UGT8Q16880 541 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 INF2Q27J81 1249 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 KIZQ2M2Z5 673 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 TMEM266Q2M3C6 531 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 CTXN3Q4LDR2 81 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 CT83Q5H943 113 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 NBPF12Q5TAG4 269 aaPredicted RBP6.9□□□□□ -1.3
VPS29-210ENST00000552130 SNX30Q5VWJ9 437 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 RAB12Q6IQ22 244 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 IRGCQ6NXR0 463 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 CRTC1Q6UUV9 634 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 TMTC3Q6ZXV5 915 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 OTUD6AQ7L8S5 288 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 NUP54Q7Z3B4 507 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 SPC24Q8NBT2 197 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 MOSPD2Q8NHP6 518 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 STYXQ8WUJ0 223 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 ZNF606Q8WXB4 792 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 ANP32BQ92688 251 aaKnown RBP6.9□□□□□ -1.3
VPS29-210ENST00000552130 RGMAQ96B86 450 aa6.9□□□□□ -1.3
VPS29-210ENST00000552130 EAF2Q96CJ1 260 aaPredicted RBP6.9□□□□□ -1.3
VPS29-210ENST00000552130 MAP6Q96JE9 813 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms