RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 SAE1Q9UBE0 346 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-207ENST00000508466 FRMPD2Q68DX3 1309 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 TRMUO75648 421 aaKnown RBP7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 CIB2O75838 187 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 FAM155BO75949 473 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 RBP3P10745 1247 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 XRCC5P13010 732 aaKnown RBP7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 RAG1P15918 1043 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 MZF1P28698 734 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 AP2B1P63010 937 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 MRPS9P82933 396 aaKnown RBP7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 RELAQ04206 551 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 PSMD6Q15008 389 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 ATP13A4Q4VNC1 1196 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 CC2D2BQ6DHV5 1058 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 MFSD5Q6N075 450 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 ARHGAP24Q8N264 748 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 PNMA1Q8ND90 353 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 LRRN4Q8WUT4 740 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 ATP2A3Q93084 1043 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 EBF4Q9BQW3 602 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 SH2D3AQ9BRG2 576 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 FHDC1Q9C0D6 1143 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 RNF41Q9H4P4 317 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 C17orf75Q9HAS0 396 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 ZNF212Q9UDV6 495 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 ANGPTL2Q9UKU9 493 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 CHD4Q14839 1912 aa7.65□□□□□ -1.19
LIMCH1-207ENST00000508466 POTEFA5A3E0 1075 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 FAM187AA6NFU0 413 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 TISP43B9A030 160 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 CDH16O75309 829 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 SEC24DO94855 1032 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 POTEIP0CG38 1075 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 TROVE2P10155 538 aaKnown RBP eCLIP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 KRT10P13645 584 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 ATF2P15336 505 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 FGFR3P22607 806 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 GCAP28676 217 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 CHRNA3P32297 505 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 GMPRP36959 345 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 MAGEA4P43358 317 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 MAP3K10Q02779 954 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 DHX34Q14147 1143 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 METTL21CQ5VZV1 264 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 TBC1D9BQ66K14 1250 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 RINT1Q6NUQ1 792 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 CCDC174Q6PII3 467 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 POTEGQ6S5H5 508 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 POTEEQ6S8J3 1075 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 PPP1R21Q6ZMI0 780 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 SLC51AQ86UW1 340 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 SLC13A5Q86YT5 568 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 ARID3BQ8IVW6 561 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 DCPSQ96C86 337 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 ARPC5LQ9BPX5 153 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 TRAIPQ9BWF2 469 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 SEMA6AQ9H2E6 1030 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 PCIF1Q9H4Z3 704 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 MANSC1Q9H8J5 431 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 MARCH7Q9H992 704 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 METTL14Q9HCE5 456 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 ANKFY1Q9P2R3 1169 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 MOSPD1Q9UJG1 213 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 EMSYQ7Z589 1322 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 BUD23O43709 281 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 FUCA1P04066 466 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 SLURP2P0DP57 97 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 TCEA1P23193 301 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 CHN2P52757 468 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 PPATQ06203 517 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 LPIN1Q14693 890 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 IZUMO3Q5VZ72 239 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 KRT79Q5XKE5 535 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 BTNL9Q6UXG8 535 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 CCDC80Q76M96 950 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 ZNF804AQ7Z570 1209 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 POLNQ7Z5Q5 900 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 PATL1Q86TB9 770 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 TRABD2AQ86V40 505 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 EIF1ADQ8N9N8 165 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 RFFLQ8WZ73 363 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 MOCOSQ96EN8 888 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 OLFM3Q96PB7 478 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 PYM1Q9BRP8 204 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 TSSK1BQ9BXA7 367 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 SPZ1Q9BXG8 430 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 KCNK13Q9HB14 408 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 ARHGEF4Q9NR80 690 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 SUN2Q9UH99 717 aa7.64□□□□□ -1.19
LIMCH1-207ENST00000508466 CLTCQ00610 1675 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 KIDINS220Q9ULH0 1771 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 FSCN2O14926 492 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 SERPINB7O75635 380 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 DGKIO75912 1065 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 EYA4O95677 639 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 PROCP04070 461 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 SMIM18P0DKX4 95 aa7.63□□□□□ -1.19
LIMCH1-207ENST00000508466 RARBP10826 455 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms