RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PPCSQ9HAB8 311 aa5.09□□□□□ -1.59
VPS29-202ENST00000447578 DHX57Q6P158 1386 aaKnown RBP5.08□□□□□ -1.6
VPS29-202ENST00000447578 PNPLA7Q6ZV29 1317 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 CCDC189A1A4V9 331 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 CDKL5O76039 1030 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 GASTP01350 101 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 MYL3P08590 195 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 RHCEP18577 417 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 ADSLP30566 484 aaPredicted RBP5.08□□□□□ -1.6
VPS29-202ENST00000447578 PTPN7P35236 360 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 FLT3LGP49771 235 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 SLC5A3P53794 718 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 ZNF280AP59817 542 aaPredicted RBP5.08□□□□□ -1.6
VPS29-202ENST00000447578 MRPS9P82933 396 aaKnown RBP5.08□□□□□ -1.6
VPS29-202ENST00000447578 RHDQ02161 417 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 MPP3Q13368 585 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 GRAMD1BQ3KR37 738 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 FAM47AQ5JRC9 791 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 ATXN7L2Q5T6C5 722 aaPredicted RBP5.08□□□□□ -1.6
VPS29-202ENST00000447578 TSHZ3Q63HK5 1081 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 USP45Q70EL2 814 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 PDZD4Q76G19 769 aaPredicted RBP5.08□□□□□ -1.6
VPS29-202ENST00000447578 KCNK18Q7Z418 384 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 ENAHQ8N8S7 591 aaPredicted RBP5.08□□□□□ -1.6
VPS29-202ENST00000447578 ZBTB34Q8NCN2 500 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.08□□□□□ -1.6
VPS29-202ENST00000447578 DIS3LQ8TF46 1054 aaKnown RBP5.08□□□□□ -1.6
VPS29-202ENST00000447578 ZNF480Q8WV37 535 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 C1GALT1C1Q96EU7 318 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 Q96MF0 132 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 KLHL11Q9NVR0 708 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 TESQ9UGI8 421 aaKnown RBP5.08□□□□□ -1.6
VPS29-202ENST00000447578 PHTF1Q9UMS5 762 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 ATP11BQ9Y2G3 1177 aa5.08□□□□□ -1.6
VPS29-202ENST00000447578 FHAD1B1AJZ9 1412 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 CXorf49A8MYA2 514 aaPredicted RBP5.07□□□□□ -1.6
VPS29-202ENST00000447578 TPP1O14773 563 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 SH3BP5O60239 455 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 ZBED1O96006 694 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 ERBB2P04626 1255 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 SERPINB3P29508 390 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 CRHR1P34998 444 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 AK2P54819 239 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 CLRN1P58418 232 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 RAP2BP61225 183 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 B3GNTL1Q67FW5 361 aaPredicted RBP5.07□□□□□ -1.6
VPS29-202ENST00000447578 CCDC149Q6ZUS6 474 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 MED25Q71SY5 747 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 SRLQ86TD4 932 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 MAPKAPK5Q8IW41 473 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 FAM186BQ8IYM0 893 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 TMEM132CQ8N3T6 1108 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 FAM156AQ8NDB6 213 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 AUTS2Q8WXX7 1259 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 COA7Q96BR5 231 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 MVB12AQ96EY5 273 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 MYD88Q99836 296 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 ZSWIM1Q9BR11 485 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 NAA15Q9BXJ9 866 aaKnown RBP5.07□□□□□ -1.6
VPS29-202ENST00000447578 UBA5Q9GZZ9 404 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 PRDM16Q9HAZ2 1276 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 PTPRHQ9HD43 1115 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 NLRC4Q9NPP4 1024 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 TUBD1Q9UJT1 453 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 TLK1Q9UKI8 766 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 LAMC3Q9Y6N6 1575 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 MAP3K1Q13233 1512 aa5.07□□□□□ -1.6
VPS29-202ENST00000447578 URB2Q14146 1524 aaKnown RBP5.07□□□□□ -1.6
VPS29-202ENST00000447578 FHOD3Q2V2M9 1422 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 PDS5BQ9NTI5 1447 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 MAST3O60307 1309 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 RPTORQ8N122 1335 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 CLSPNQ9HAW4 1339 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 POLR2AP24928 1970 aaKnown RBP5.06□□□□□ -1.6
VPS29-202ENST00000447578 CCDC78A2IDD5 438 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 A6NNZ2 444 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 MGST3O14880 152 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 SLC16A1P53985 500 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 CCT2P78371 535 aaKnown RBP5.06□□□□□ -1.6
VPS29-202ENST00000447578 BLOC1S1P78537 153 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 CDK17Q00537 523 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 KIAA0753Q2KHM9 967 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 MUM1Q2TAK8 710 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 C1orf228Q6PIY5 440 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 TOGARAM2Q6ZUX3 1019 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 SKAP1Q86WV1 359 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 RHOT2Q8IXI1 618 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 TRMT2AQ8IZ69 625 aaKnown RBP5.06□□□□□ -1.6
VPS29-202ENST00000447578 ACRBPQ8NEB7 543 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 VPS37AQ8NEZ2 397 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 PPP1R35Q8TAP8 253 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 GJA10Q969M2 543 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 SPATA5L1Q9BVQ7 753 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 ALOXE3Q9BYJ1 711 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 PLCB1Q9NQ66 1216 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 DPP7Q9UHL4 492 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 SERPINB13Q9UIV8 391 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 TIAM1Q13009 1591 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 LRRC9Q6ZRR7 1453 aa5.06□□□□□ -1.6
VPS29-202ENST00000447578 ATRNL1Q5VV63 1379 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms