RNA–Protein interactions for RNA: ENST00000439717.2

HSPG2-206, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 637 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-206ENST00000439717 PAPLNO95428 1278 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 MBD3O95983 291 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 EPB41P11171 864 aaKnown RBP12.72□□□□□ -0.37
HSPG2-206ENST00000439717 CD44P16070 742 aaKnown RBP12.72□□□□□ -0.37
HSPG2-206ENST00000439717 ATICP31939 592 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 KCNQ1P51787 676 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 VAMP7P51809 220 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 PMS1P54277 932 aaKnown RBP12.72□□□□□ -0.37
HSPG2-206ENST00000439717 BFSP1Q12934 665 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 SMAD2Q15796 467 aaKnown RBP12.72□□□□□ -0.37
HSPG2-206ENST00000439717 CLUL1Q15846 466 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 TPGS2Q68CL5 300 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 CES5AQ6NT32 575 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 RSPO2Q6UXX9 243 aaPredicted RBP12.72□□□□□ -0.37
HSPG2-206ENST00000439717 DPH6Q7L8W6 267 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 METTL23Q86XA0 190 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 GLYCTKQ8IVS8 523 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 TMEM86AQ8N2M4 240 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 KREMEN2Q8NCW0 462 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 CMASQ8NFW8 434 aaPredicted RBP12.72□□□□□ -0.37
HSPG2-206ENST00000439717 ZNF461Q8TAF7 563 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 SPATA18Q8TC71 538 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 GPT2Q8TD30 523 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 HPDLQ96IR7 371 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 ADAM7Q9H2U9 754 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 FBXW11Q9UKB1 542 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 MAFFQ9ULX9 164 aa12.72□□□□□ -0.37
HSPG2-206ENST00000439717 TIMM13Q9Y5L4 95 aaPredicted RBP12.72□□□□□ -0.37
HSPG2-206ENST00000439717 TRIM49BA6NDI0 452 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 HUS1O60921 280 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 PHACTR2O75167 634 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 ABLIM3O94929 683 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 STAU1O95793 577 aaKnown RBP12.71□□□□□ -0.37
HSPG2-206ENST00000439717 CST3P01034 146 aaPredicted RBP12.71□□□□□ -0.37
HSPG2-206ENST00000439717 C4BPAP04003 597 aaKnown RBP12.71□□□□□ -0.37
HSPG2-206ENST00000439717 DLG4P78352 724 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 ROR1Q01973 937 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 PAK1Q13153 545 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 TRPC3Q13507 836 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 UVSSAQ2YD98 709 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 LIN9Q5TKA1 542 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 TDRD10Q5VZ19 366 aaKnown RBP12.71□□□□□ -0.37
HSPG2-206ENST00000439717 KLHL10Q6JEL2 608 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 TTI2Q6NXR4 508 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 C15orf39Q6ZRI6 1047 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 THEM5Q8N1Q8 247 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 TOP6BLQ8N6T0 577 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 MLKLQ8NB16 471 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 NELFBQ8WX92 580 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 SUSD6Q92537 303 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 SYAP1Q96A49 352 aaPredicted RBP12.71□□□□□ -0.37
HSPG2-206ENST00000439717 FAM84AQ96KN4 292 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 RIPOR3Q96MK2 946 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 CEP63Q96MT8 703 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 NECTIN4Q96NY8 510 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 RHOBTB2Q9BYZ6 727 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 ZDHHC7Q9NXF8 308 aa12.71□□□□□ -0.37
HSPG2-206ENST00000439717 USP15Q9Y4E8 981 aaPredicted RBP12.71□□□□□ -0.37
HSPG2-206ENST00000439717 WDR27A2RRH5 827 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 STX10O60499 249 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 ZMYND10O75800 440 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 HNRNPA1P09651 372 aaKnown RBP eCLIP12.7□□□□□ -0.38
HSPG2-206ENST00000439717 FAM163BP0C2L3 166 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 SPATA31D3P0C874 917 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 ATF2P15336 505 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 HOXA9P31269 272 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 GTF2H1P32780 548 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 MTHFRP42898 656 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 BIRC3Q13489 604 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 ZACNQ401N2 412 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 ATAT1Q5SQI0 421 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 C1orf220Q5T0J3 134 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 RARS2Q5T160 578 aaKnown RBP12.7□□□□□ -0.38
HSPG2-206ENST00000439717 WSCD1Q658N2 575 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 SCARA3Q6AZY7 606 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 SPATA31D4Q6ZUB0 917 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 CCDC149Q6ZUS6 474 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 FILIP1Q7Z7B0 1213 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 GPR149Q86SP6 731 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 VRTNQ9H8Y1 702 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 METTL14Q9HCE5 456 aaKnown RBP12.7□□□□□ -0.38
HSPG2-206ENST00000439717 PRKAG3Q9UGI9 489 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 CTNND2Q9UQB3 1225 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 SNX9Q9Y5X1 595 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 PLXNA3P51805 1871 aa12.7□□□□□ -0.38
HSPG2-206ENST00000439717 SCN1AP35498 2009 aa12.69□□□□□ -0.38
HSPG2-206ENST00000439717 CCDC195A0A1B0GUA6 201 aa12.69□□□□□ -0.38
HSPG2-206ENST00000439717 FGFR1OPO95684 399 aaKnown RBP12.69□□□□□ -0.38
HSPG2-206ENST00000439717 C8AP07357 584 aa12.69□□□□□ -0.38
HSPG2-206ENST00000439717 POU2F2P09086 479 aa12.69□□□□□ -0.38
HSPG2-206ENST00000439717 CPB1P15086 417 aa12.69□□□□□ -0.38
HSPG2-206ENST00000439717 IL9P15248 144 aa12.69□□□□□ -0.38
HSPG2-206ENST00000439717 ELF1P32519 619 aa12.69□□□□□ -0.38
HSPG2-206ENST00000439717 LHX1P48742 406 aa12.69□□□□□ -0.38
HSPG2-206ENST00000439717 ARPP19P56211 112 aa12.69□□□□□ -0.38
HSPG2-206ENST00000439717 MYL6P60660 151 aa12.69□□□□□ -0.38
HSPG2-206ENST00000439717 SMARCB1Q12824 385 aa12.69□□□□□ -0.38
HSPG2-206ENST00000439717 NCOA4Q13772 614 aa12.69□□□□□ -0.38
HSPG2-206ENST00000439717 CBX2Q14781 532 aaPredicted RBP12.69□□□□□ -0.38
HSPG2-206ENST00000439717 PPM1LQ5SGD2 360 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms