RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ZSWIM2Q8NEG5 633 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 TMEM174Q8WUU8 243 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 RIPOR3Q96MK2 946 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 NECTIN4Q96NY8 510 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 CGRRF1Q99675 332 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 TSG101Q99816 390 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 MTMR12Q9C0I1 747 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 INTS13Q9NVM9 706 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 PRKAG3Q9UGI9 489 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 DSEQ9UL01 958 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 TRAF3IP3Q9Y228 551 aa14.03□□□□□ -0.16
CLK3-224ENST00000568605 KRT19P08727 400 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 DLATP10515 647 aaKnown RBP14.02□□□□□ -0.17
CLK3-224ENST00000568605 BMP1P13497 986 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 IL9P15248 144 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 RPL17P18621 184 aaKnown RBP14.02□□□□□ -0.17
CLK3-224ENST00000568605 TYMPP19971 482 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 NR2F2P24468 414 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 POLR2BP30876 1174 aaKnown RBP14.02□□□□□ -0.17
CLK3-224ENST00000568605 MTHFRP42898 656 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 AP3M2P53677 418 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 LILRA4P59901 499 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 MYO1EQ12965 1108 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 PSMD6Q15008 389 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 DUOXA2Q1HG44 320 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 CTXN3Q4LDR2 81 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 COBLL1Q53SF7 1204 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 METTL23Q86XA0 190 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 LRRC52Q8N7C0 313 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 RDH13Q8NBN7 331 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 SPATA20Q8TB22 786 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 UHRF1Q96T88 793 aaPredicted RBP14.02□□□□□ -0.17
CLK3-224ENST00000568605 TSHZ2Q9NRE2 1034 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 MAPK8IP1Q9UQF2 711 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 PCDHA5Q9Y5H7 936 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 CDY1Q9Y6F8 540 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 XIRP2A4UGR9 3374 aa14.02□□□□□ -0.17
CLK3-224ENST00000568605 PSMA7O14818 248 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 MAPK13O15264 365 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 TGM5O43548 720 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 CPB1P15086 417 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 OR1D2P34982 312 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 RAB33AQ14088 237 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 CBX2Q14781 532 aaPredicted RBP14.01□□□□□ -0.17
CLK3-224ENST00000568605 EDRF1Q3B7T1 1238 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 RARS2Q5T160 578 aaKnown RBP14.01□□□□□ -0.17
CLK3-224ENST00000568605 CEP135Q66GS9 1140 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 OVOS1Q6IE37 1185 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 RTL10Q7L3V2 364 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 PALB2Q86YC2 1186 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 C1orf127Q8N9H9 656 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 CMASQ8NFW8 434 aaPredicted RBP14.01□□□□□ -0.17
CLK3-224ENST00000568605 CCDC127Q96BQ5 260 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 CLSTN3Q9BQT9 956 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 ZDHHC7Q9NXF8 308 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 FBXW11Q9UKB1 542 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 AGAP1Q9UPQ3 857 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 USP15Q9Y4E8 981 aaPredicted RBP14.01□□□□□ -0.17
CLK3-224ENST00000568605 GREB1Q4ZG55 1949 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 NUP210Q8TEM1 1887 aaPredicted RBP14.01□□□□□ -0.17
CLK3-224ENST00000568605 CUL9Q8IWT3 2517 aa14.01□□□□□ -0.17
CLK3-224ENST00000568605 KPNA7A9QM74 516 aa14□□□□□ -0.17
CLK3-224ENST00000568605 PPEF2O14830 753 aa14□□□□□ -0.17
CLK3-224ENST00000568605 CLSTN1O94985 981 aa14□□□□□ -0.17
CLK3-224ENST00000568605 KRT13P13646 458 aa14□□□□□ -0.17
CLK3-224ENST00000568605 WNT7BP56706 349 aa14□□□□□ -0.17
CLK3-224ENST00000568605 RBP5P82980 135 aa14□□□□□ -0.17
CLK3-224ENST00000568605 ROR1Q01973 937 aa14□□□□□ -0.17
CLK3-224ENST00000568605 LRRC63Q05C16 580 aa14□□□□□ -0.17
CLK3-224ENST00000568605 LMBRD2Q68DH5 695 aaPredicted RBP14□□□□□ -0.17
CLK3-224ENST00000568605 SLC8B1Q6J4K2 584 aa14□□□□□ -0.17
CLK3-224ENST00000568605 SYCE2Q6PIF2 218 aa14□□□□□ -0.17
CLK3-224ENST00000568605 CYP26C1Q6V0L0 522 aa14□□□□□ -0.17
CLK3-224ENST00000568605 C15orf39Q6ZRI6 1047 aa14□□□□□ -0.17
CLK3-224ENST00000568605 CCDC149Q6ZUS6 474 aa14□□□□□ -0.17
CLK3-224ENST00000568605 SMYD4Q8IYR2 804 aaPredicted RBP14□□□□□ -0.17
CLK3-224ENST00000568605 CSGALNACT2Q8N6G5 542 aa14□□□□□ -0.17
CLK3-224ENST00000568605 TRIML1Q8N9V2 468 aa14□□□□□ -0.17
CLK3-224ENST00000568605 KREMEN2Q8NCW0 462 aa14□□□□□ -0.17
CLK3-224ENST00000568605 SENP8Q96LD8 212 aa14□□□□□ -0.17
CLK3-224ENST00000568605 MFSD14AQ96MC6 490 aa14□□□□□ -0.17
CLK3-224ENST00000568605 APOL5Q9BWW9 433 aa14□□□□□ -0.17
CLK3-224ENST00000568605 ADAM7Q9H2U9 754 aa14□□□□□ -0.17
CLK3-224ENST00000568605 DMAC2Q9NW81 257 aa14□□□□□ -0.17
CLK3-224ENST00000568605 MYO16Q9Y6X6 1858 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 TTC28Q96AY4 2481 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 PTPRJQ12913 1337 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 MYO10Q9HD67 2058 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 NOTCH4Q99466 2003 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 OR6C75A6NL08 312 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 CYB561D2O14569 222 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 HUS1O60921 280 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 OAZ2O95190 189 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 CYP11A1P05108 521 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 C8AP07357 584 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 IGFBP6P24592 240 aaPredicted RBP13.99□□□□□ -0.17
CLK3-224ENST00000568605 ELF1P32519 619 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 PRCPP42785 496 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 BFSP1Q12934 665 aa13.99□□□□□ -0.17
CLK3-224ENST00000568605 MRPL58Q14197 206 aaKnown RBP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms