RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 BRAFP15056 766 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 HSPA6P17066 643 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 HERVK_113P62684 666 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 UBXN2AP68543 259 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 ABHD17AQ96GS6 310 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 PIGSQ96S52 555 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 TTC1Q99614 292 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 GCNT4Q9P109 453 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 RNF14Q9UBS8 474 aa5.84□□□□□ -1.47
LIMA1-203ENST00000547825 NOC2LQ9Y3T9 749 aaKnown RBP5.84□□□□□ -1.47
LIMA1-203ENST00000547825 ALPK3Q96L96 1907 aa5.84□□□□□ -1.48
LIMA1-203ENST00000547825 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 ZNF263O14978 683 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 CALUO43852 315 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 CFBP00751 764 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 SERPINB6P35237 376 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 KCNJ1P48048 391 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 IL9RQ01113 521 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 SPEM2Q0P670 501 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 TMED1Q13445 227 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 TNIP1Q15025 636 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 GRIK5Q16478 980 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 PGBD3Q8N328 593 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 CASKIN2Q8WXE0 1202 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 PNMA5Q96PV4 448 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 POP1Q99575 1024 aaKnown RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 ANKRD2Q9GZV1 360 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 HDAC9Q9UKV0 1011 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 TTC7AQ9ULT0 858 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 NID2Q14112 1375 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 IGF2BP3O00425 579 aaKnown RBP eCLIP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 ATXN7O15265 892 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 HSD17B3P37058 310 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 GIPRP48546 466 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 PMS2P54278 862 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 CUL1Q13616 776 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 TRADDQ15628 312 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 LONRF1Q17RB8 773 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 SGO2Q562F6 1265 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 DPP8Q6V1X1 898 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 ADSSL1Q8N142 457 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 LRRC43Q8N309 656 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 PIP4K2CQ8TBX8 421 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 CCDC110Q8TBZ0 833 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 TRPM4Q8TD43 1214 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 GATAD2BQ8WXI9 593 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 RAPGEF5Q92565 580 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 ZKSCAN4Q969J2 545 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 HAUS1Q96CS2 278 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 TEPSINQ96N21 525 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 FAM118BQ9BPY3 351 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 TMEM60Q9H2L4 133 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 SH2D4AQ9H788 454 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 CNOT10Q9H9A5 744 aaKnown RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 STRIP2Q9ULQ0 834 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 DYRK1BQ9Y463 629 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 GAKO14976 1311 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 SMCHD1A6NHR9 2005 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 E9PMD0 336 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 DLATP10515 647 aaKnown RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 ATF2P15336 505 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 RFC1P35251 1148 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 SATB1Q01826 763 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 SMAD1Q15797 465 aaKnown RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 GLE1Q53GS7 698 aaKnown RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 MRM1Q6IN84 353 aaKnown RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 ARMC9Q7Z3E5 817 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 LSRQ86X29 649 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 LRRC34Q8IZ02 419 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 SRBD1Q8N5C6 995 aaKnown RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 WDR66Q8TBY9 1149 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 GPR101Q96P66 508 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 XPO6Q96QU8 1125 aaKnown RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 PACSIN1Q9BY11 444 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 VCX3BQ9H321 246 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 SPC25Q9HBM1 224 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 ADARB2Q9NS39 739 aaKnown RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 TMEM260Q9NX78 707 aa5.83□□□□□ -1.48
LIMA1-203ENST00000547825 DDX25Q9UHL0 483 aaKnown RBP5.83□□□□□ -1.48
LIMA1-203ENST00000547825 RASA4BC9J798 803 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 GOLGA8SH3BPF8 625 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 GOLGA8MH3BSY2 632 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 RASA4O43374 803 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 GJB6O95452 261 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 PSAPP07602 524 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 BCRP11274 1271 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 ATP2A2P16615 1042 aaKnown RBP5.82□□□□□ -1.48
LIMA1-203ENST00000547825 TRAPPC10P48553 1259 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 TNP2Q05952 138 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 CLUL1Q15846 466 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 SAMD5Q5TGI4 173 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 DCUN1D2Q6PH85 259 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 SLC30A9Q6PML9 568 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 TMTC3Q6ZXV5 915 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 REC114Q7Z4M0 266 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 PALM2Q8IXS6 379 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 MORC4Q8TE76 937 aa5.82□□□□□ -1.48
LIMA1-203ENST00000547825 JDP2Q8WYK2 163 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 252.6 ms