RNA–Protein interactions for RNA: ENST00000498808.5

HDAC6-236, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-236ENST00000498808 RPP40O75818 363 aaKnown RBP17.13■□□□□ 0.33
HDAC6-236ENST00000498808 STXBP5Q5T5C0 1151 aa17.13■□□□□ 0.33
HDAC6-236ENST00000498808 ZNF280DQ6N043 979 aa17.13■□□□□ 0.33
HDAC6-236ENST00000498808 PSAPL1Q6NUJ1 521 aa17.13■□□□□ 0.33
HDAC6-236ENST00000498808 RNF19BQ6ZMZ0 732 aa17.13■□□□□ 0.33
HDAC6-236ENST00000498808 CACNA2D4Q7Z3S7 1137 aa17.13■□□□□ 0.33
HDAC6-236ENST00000498808 CATSPER3Q86XQ3 398 aa17.13■□□□□ 0.33
HDAC6-236ENST00000498808 YIPF1Q9Y548 306 aa17.13■□□□□ 0.33
HDAC6-236ENST00000498808 STK36Q9NRP7 1315 aa17.13■□□□□ 0.33
HDAC6-236ENST00000498808 MED24O75448 989 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 VNN2O95498 520 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 XBP1P17861 261 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 MPLP40238 635 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 GRM5P41594 1212 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 SCRN1Q12765 414 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 TCEAL6Q6IPX3 200 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 ARID3BQ8IVW6 561 aaPredicted RBP17.12■□□□□ 0.33
HDAC6-236ENST00000498808 SYNPOQ8N3V7 929 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 KDF1Q8NAX2 398 aaPredicted RBP17.12■□□□□ 0.33
HDAC6-236ENST00000498808 FAM200AQ8TCP9 573 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 TCEAL3Q969E4 200 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 SUSD3Q96L08 255 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 MTMR9Q96QG7 549 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 MKNK1Q9BUB5 465 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 TMEM121BQ9BXQ6 578 aaPredicted RBP17.12■□□□□ 0.33
HDAC6-236ENST00000498808 DNAJC25Q9H1X3 360 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 CDT1Q9H211 546 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 POLD4Q9HCU8 107 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 MAFFQ9ULX9 164 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 NUB1Q9Y5A7 615 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 PCDHGA5Q9Y5G8 931 aa17.12■□□□□ 0.33
HDAC6-236ENST00000498808 NUP210Q8TEM1 1887 aaPredicted RBP17.12■□□□□ 0.33
HDAC6-236ENST00000498808 CCDC163A0A0D9SF12 145 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 NEMFO60524 1076 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 CPB1P15086 417 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 CYP11B2P19099 503 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 OSTNP61366 133 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 ACAP1Q15027 740 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 RNF43Q68DV7 783 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 PADI6Q6TGC4 694 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 BEST2Q8NFU1 509 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 CRISPLD1Q9H336 500 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 TUFT1Q9NNX1 390 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 TOPORSQ9NS56 1045 aaPredicted RBP17.11■□□□□ 0.33
HDAC6-236ENST00000498808 SLC38A7Q9NVC3 462 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 WASF3Q9UPY6 502 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 TNFSF13BQ9Y275 285 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 CYP46A1Q9Y6A2 500 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 CITO14578 2027 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 ATG2BQ96BY7 2078 aa17.11■□□□□ 0.33
HDAC6-236ENST00000498808 GIPC1O14908 333 aa17.1■□□□□ 0.33
HDAC6-236ENST00000498808 MEFVO15553 781 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-236ENST00000498808 CDKL5O76039 1030 aa17.1■□□□□ 0.33
HDAC6-236ENST00000498808 CCDC192P0DO97 292 aa17.1■□□□□ 0.33
HDAC6-236ENST00000498808 KRT2P35908 639 aa17.1■□□□□ 0.33
HDAC6-236ENST00000498808 NOVA1P51513 510 aaKnown RBP17.1■□□□□ 0.33
HDAC6-236ENST00000498808 YARSP54577 528 aaKnown RBP17.1■□□□□ 0.33
HDAC6-236ENST00000498808 TNK2Q07912 1038 aa17.1■□□□□ 0.33
HDAC6-236ENST00000498808 PPP2R5AQ15172 486 aa17.1■□□□□ 0.33
HDAC6-236ENST00000498808 ARHGAP29Q52LW3 1261 aa17.1■□□□□ 0.33
HDAC6-236ENST00000498808 DDX12PQ92771 950 aa17.1■□□□□ 0.33
HDAC6-236ENST00000498808 C18orf25Q96B23 403 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-236ENST00000498808 NACC1Q96RE7 527 aa17.1■□□□□ 0.33
HDAC6-236ENST00000498808 CCDC94Q9BW85 323 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-236ENST00000498808 TMEM60Q9H2L4 133 aa17.1■□□□□ 0.33
HDAC6-236ENST00000498808 DAXXQ9UER7 740 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-236ENST00000498808 KCNE1P15382 129 aa17.09■□□□□ 0.33
HDAC6-236ENST00000498808 SPINK2P20155 84 aa17.09■□□□□ 0.33
HDAC6-236ENST00000498808 RPL9P32969 192 aaKnown RBP17.09■□□□□ 0.33
HDAC6-236ENST00000498808 MCM4P33991 863 aa17.09■□□□□ 0.33
HDAC6-236ENST00000498808 EFNA5P52803 228 aa17.09■□□□□ 0.33
HDAC6-236ENST00000498808 CACNB1Q02641 598 aaPredicted RBP17.09■□□□□ 0.33
HDAC6-236ENST00000498808 GAREM2Q75VX8 874 aa17.09■□□□□ 0.33
HDAC6-236ENST00000498808 APBB1IPQ7Z5R6 666 aaPredicted RBP17.09■□□□□ 0.33
HDAC6-236ENST00000498808 ZC3H10Q96K80 434 aaKnown RBP17.09■□□□□ 0.33
HDAC6-236ENST00000498808 TBC1D32Q96NH3 1257 aa17.09■□□□□ 0.33
HDAC6-236ENST00000498808 PTPRHQ9HD43 1115 aa17.09■□□□□ 0.33
HDAC6-236ENST00000498808 VPS45Q9NRW7 570 aa17.09■□□□□ 0.33
HDAC6-236ENST00000498808 CNTN3Q9P232 1028 aa17.09■□□□□ 0.33
HDAC6-236ENST00000498808 LAMA1P25391 3075 aa17.08■□□□□ 0.33
HDAC6-236ENST00000498808 PKD1L2Q7Z442 2459 aa17.08■□□□□ 0.33
HDAC6-236ENST00000498808 ARHGEF35A5YM69 484 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 AKAP3O75969 853 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 CTDNEP1O95476 244 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 PRAMEF12O95522 483 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 OR4Q2P0C623 313 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 ZNF252P-AS1Q0IIN9 211 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 FOXC1Q12948 553 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 ZNF568Q3ZCX4 644 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 PLK5Q496M5 336 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 HAUS6Q7Z4H7 955 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 APPL2Q8NEU8 664 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 PGLYRP2Q96PD5 576 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 ACO2Q99798 780 aaKnown RBP17.08■□□□□ 0.32
HDAC6-236ENST00000498808 POLR3CQ9BUI4 534 aaPredicted RBP17.08■□□□□ 0.32
HDAC6-236ENST00000498808 EDEM2Q9BV94 578 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 POLR3BQ9NW08 1133 aaPredicted RBP17.08■□□□□ 0.32
HDAC6-236ENST00000498808 OBP2AQ9NY56 170 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 PCDHB8Q9UN66 801 aa17.08■□□□□ 0.32
HDAC6-236ENST00000498808 DPYSL4O14531 572 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms