RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 HNRNPA1P09651 372 aaKnown RBP eCLIP11.53□□□□□ -0.56
UBR4-208ENST00000459947 DNAJB1P25685 340 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 HOXA9P31269 272 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 MYL7Q01449 175 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 BFSP1Q12934 665 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 DCP1BQ8IZD4 617 aaKnown RBP11.53□□□□□ -0.56
UBR4-208ENST00000459947 RIPOR3Q96MK2 946 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 GPR62Q9BZJ7 368 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 VRTNQ9H8Y1 702 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 CLDND1Q9NY35 253 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 AGAP1Q9UPQ3 857 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 CCDC192P0DO97 292 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 LIN9Q5TKA1 542 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 SASS6Q6UVJ0 657 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 TMEM173Q86WV6 379 aaPredicted RBP11.53□□□□□ -0.56
UBR4-208ENST00000459947 SLC22A17Q8WUG5 538 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 ANO10Q9NW15 660 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 ZDHHC7Q9NXF8 308 aa11.53□□□□□ -0.56
UBR4-208ENST00000459947 SPDYE4A6NLX3 237 aa11.52□□□□□ -0.56
UBR4-208ENST00000459947 P4HA2O15460 535 aa11.52□□□□□ -0.56
UBR4-208ENST00000459947 OAZ2O95190 189 aa11.52□□□□□ -0.56
UBR4-208ENST00000459947 IRS1P35568 1242 aa11.52□□□□□ -0.56
UBR4-208ENST00000459947 LHX1P48742 406 aa11.52□□□□□ -0.56
UBR4-208ENST00000459947 LILRA4P59901 499 aa11.52□□□□□ -0.56
UBR4-208ENST00000459947 YWHAHQ04917 246 aaPredicted RBP11.52□□□□□ -0.56
UBR4-208ENST00000459947 CES5AQ6NT32 575 aa11.52□□□□□ -0.56
UBR4-208ENST00000459947 RBM43Q6ZSC3 357 aaKnown RBP11.52□□□□□ -0.56
UBR4-208ENST00000459947 SENP8Q96LD8 212 aa11.52□□□□□ -0.56
UBR4-208ENST00000459947 VN1R3Q9BXE9 311 aa11.52□□□□□ -0.56
UBR4-208ENST00000459947 ARMCX3Q9UH62 379 aaPredicted RBP11.52□□□□□ -0.56
UBR4-208ENST00000459947 KPNA7A9QM74 516 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 PCSK1P29120 753 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 POLR2BP30876 1174 aaKnown RBP11.52□□□□□ -0.57
UBR4-208ENST00000459947 MRPL58Q14197 206 aaKnown RBP11.52□□□□□ -0.57
UBR4-208ENST00000459947 TPD52L1Q16890 204 aaPredicted RBP11.52□□□□□ -0.57
UBR4-208ENST00000459947 CCDC40Q4G0X9 1142 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 ANKRD54Q6NXT1 300 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 TRAPPC11Q7Z392 1133 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 CSGALNACT2Q8N6G5 542 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 FAM81BQ96LP2 452 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 PRKAG3Q9UGI9 489 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 PMM2O15305 246 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 MEFVO15553 781 aaPredicted RBP11.52□□□□□ -0.57
UBR4-208ENST00000459947 ITGB3P05106 788 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 DLATP10515 647 aaKnown RBP11.52□□□□□ -0.57
UBR4-208ENST00000459947 ELF1P32519 619 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 YWHAEP62258 255 aaKnown RBP11.52□□□□□ -0.57
UBR4-208ENST00000459947 TNNC1P63316 161 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 TSPY1Q01534 308 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 BIRC3Q13489 604 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 MAPRE1Q15691 268 aaKnown RBP11.52□□□□□ -0.57
UBR4-208ENST00000459947 CTXN3Q4LDR2 81 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 VARS2Q5ST30 1063 aaKnown RBP11.52□□□□□ -0.57
UBR4-208ENST00000459947 OVOS1Q6IE37 1185 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 CEP57Q86XR8 500 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 LNX1Q8TBB1 728 aaPredicted RBP11.52□□□□□ -0.57
UBR4-208ENST00000459947 POP1Q99575 1024 aaKnown RBP11.52□□□□□ -0.57
UBR4-208ENST00000459947 TMEM8AQ9HCN3 771 aa11.52□□□□□ -0.57
UBR4-208ENST00000459947 PAPLNO95428 1278 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 KRT19P08727 400 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 SGSM1Q2NKQ1 1148 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 SLC8B1Q6J4K2 584 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 C1orf127Q8N9H9 656 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 CCDC127Q96BQ5 260 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 MTMR12Q9C0I1 747 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 NAT10Q9H0A0 1025 aaKnown RBP11.51□□□□□ -0.57
UBR4-208ENST00000459947 GOLGA2P5Q9HBQ8 144 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 PPP1R3GB7ZBB8 358 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 CYB561D2O14569 222 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 XYLBO75191 536 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 BRCC3P46736 316 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 NFE2Q16621 373 aaPredicted RBP11.51□□□□□ -0.57
UBR4-208ENST00000459947 CD300LGQ6UXG3 332 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 HPDLQ96IR7 371 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 CTNND2Q9UQB3 1225 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 CNPP09543 421 aaKnown RBP11.51□□□□□ -0.57
UBR4-208ENST00000459947 CCDC85BQ15834 202 aaPredicted RBP11.51□□□□□ -0.57
UBR4-208ENST00000459947 STX1AQ16623 288 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 KRT39Q6A163 491 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 RDH13Q8NBN7 331 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 LEMD2Q8NC56 503 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 PPM1EQ8WY54 764 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 IGFLR1Q9H665 355 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 MAGEC2Q9UBF1 373 aaPredicted RBP11.51□□□□□ -0.57
UBR4-208ENST00000459947 AFF4Q9UHB7 1163 aaKnown RBP11.51□□□□□ -0.57
UBR4-208ENST00000459947 MAPK8IP1Q9UQF2 711 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 ATP8B3O60423 1300 aa11.51□□□□□ -0.57
UBR4-208ENST00000459947 TEX28O15482 410 aa11.5□□□□□ -0.57
UBR4-208ENST00000459947 TPM2P07951 284 aa11.5□□□□□ -0.57
UBR4-208ENST00000459947 TKTP29401 623 aaKnown RBP11.5□□□□□ -0.57
UBR4-208ENST00000459947 MARSP56192 900 aaKnown RBP11.5□□□□□ -0.57
UBR4-208ENST00000459947 CAMK4Q16566 473 aa11.5□□□□□ -0.57
UBR4-208ENST00000459947 ZACNQ401N2 412 aa11.5□□□□□ -0.57
UBR4-208ENST00000459947 ZNF667Q5HYK9 610 aa11.5□□□□□ -0.57
UBR4-208ENST00000459947 CEP295NLQ96MC4 621 aa11.5□□□□□ -0.57
UBR4-208ENST00000459947 CYP3A43Q9HB55 503 aa11.5□□□□□ -0.57
UBR4-208ENST00000459947 FBXW11Q9UKB1 542 aa11.5□□□□□ -0.57
UBR4-208ENST00000459947 ATG2AQ2TAZ0 1938 aa11.5□□□□□ -0.57
UBR4-208ENST00000459947 SPAG1Q07617 926 aa11.5□□□□□ -0.57
UBR4-208ENST00000459947 TTI2Q6NXR4 508 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms