RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CALB1P05937 261 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 GRK3P35626 688 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 ACADSBP45954 432 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 GEMIN4P57678 1058 aaKnown RBP9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 RHOAP61586 193 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 BASP1P80723 227 aaKnown RBP9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 MORC3Q14149 939 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 LRRC46Q96FV0 321 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 MYOCQ99972 504 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 DNAJC11Q9NVH1 559 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 ABI3Q9P2A4 366 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 PAX3P23760 479 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 GNA15P30679 374 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 RFC2P35250 354 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 RPIAP49247 311 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 LIG3P49916 1009 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 SPDYE7PQ495Y7 208 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 MTSS1LQ765P7 747 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 AFAP1L1Q8TED9 768 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 MRFAP1L1Q96HT8 127 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 LZTFL1Q9NQ48 299 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 CASS4Q9NQ75 786 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 HEY1Q9Y5J3 304 aa9.71□□□□□ -0.85
LIMCH1-202ENST00000381753 PTPRUQ92729 1446 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 NEDD4P46934 1319 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 GPC4O75487 556 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 USP2O75604 605 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 HDCP19113 662 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 AKAP5P24588 427 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 ATP11AP98196 1134 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 SPOPLQ6IQ16 392 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 ARMC2Q8NEN0 867 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 UROC1Q96N76 676 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 DCBLD2Q96PD2 775 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 IL12RB2Q99665 862 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 FAM129AQ9BZQ8 928 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 ALKBH4Q9NXW9 302 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 NFU1Q9UMS0 254 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 TIMM13Q9Y5L4 95 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 CNTNAP2Q9UHC6 1331 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 FSBPO95073 299 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 TM4SF1P30408 202 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 GUCA1AP43080 201 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 KDSRQ06136 332 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 ACTN3Q08043 901 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 C2orf27AQ580R0 203 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 RMDN2Q96LZ7 410 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 FIS1Q9Y3D6 152 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 USP17L7P0C7H9 530 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 HOXA10P31260 410 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 ASPHQ12797 758 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 HHATQ5VTY9 493 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 CNKSR3Q6P9H4 555 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 POTEDQ86YR6 584 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 CCDC170Q8IYT3 715 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 HVCN1Q96D96 273 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 SLC9A7Q96T83 725 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 PI4K2AQ9BTU6 479 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 CELF4Q9BZC1 486 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 FBXO44Q9H4M3 255 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 BARHL2Q9NY43 387 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 SNTG2Q9NY99 539 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 ADAM22Q9P0K1 906 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 HDAC6Q9UBN7 1215 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 SEL1LQ9UBV2 794 aa9.71□□□□□ -0.86
LIMCH1-202ENST00000381753 KCNJ18B7U540 433 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 ARVCFO00192 962 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 PER2O15055 1255 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 PFKFB2O60825 505 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 H2AFYO75367 372 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 ITGB3P05106 788 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 ALADP13716 330 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 FSHRP23945 695 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 YWHAQP27348 245 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 ZNF131P52739 623 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 SNW1Q13573 536 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 KCNJ12Q14500 433 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 FAXCQ5TGI0 409 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 ATP8B4Q8TF62 1192 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 ABCA6Q8N139 1617 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 PDE2AO00408 941 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 MAPK13O15264 365 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 LUC7L3O95232 432 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 FYB2Q5VWT5 728 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 GRAMD4Q6IC98 578 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 MTMR14Q8NCE2 650 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 FAM122AQ96E09 287 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 LATS2Q9NRM7 1088 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 CACNA2D2Q9NY47 1150 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 CA14Q9ULX7 337 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 PREX1Q8TCU6 1659 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 ARHGAP42A6NI28 874 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 IL1BP01584 269 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 RBMS1P29558 406 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 EVCP57679 992 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 SP2Q02086 613 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 PKN3Q6P5Z2 889 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 IFNKQ9P0W0 207 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 ZNF711Q9Y462 761 aa9.7□□□□□ -0.86
LIMCH1-202ENST00000381753 ABHD14A-ACY1A0A1B0GW23 586 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms