RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TMEM134Q9H6X4 195 aa10.22□□□□□ -0.77
SMCHD1-204ENST00000581226 PARP9Q8IXQ6 854 aa10.21□□□□□ -0.77
SMCHD1-204ENST00000581226 GPCPD1Q9NPB8 672 aa10.21□□□□□ -0.77
SMCHD1-204ENST00000581226 BRPF1P55201 1214 aaPredicted RBP10.2□□□□□ -0.78
SMCHD1-204ENST00000581226 SWT1Q5T5J6 900 aaKnown RBP10.2□□□□□ -0.78
SMCHD1-204ENST00000581226 DAXXQ9UER7 740 aaPredicted RBP10.2□□□□□ -0.78
SMCHD1-204ENST00000581226 SAMD7Q7Z3H4 446 aa10.19□□□□□ -0.78
SMCHD1-204ENST00000581226 REPIN1Q9BWE0 567 aaKnown RBP10.19□□□□□ -0.78
SMCHD1-204ENST00000581226 GPBP1L1Q9HC44 474 aaPredicted RBP10.19□□□□□ -0.78
SMCHD1-204ENST00000581226 GIGYF2Q6Y7W6 1299 aaKnown RBP10.18□□□□□ -0.78
SMCHD1-204ENST00000581226 TMUB1Q9BVT8 246 aa10.18□□□□□ -0.78
SMCHD1-204ENST00000581226 ANKK1Q8NFD2 765 aa10.17□□□□□ -0.78
SMCHD1-204ENST00000581226 WNT2BQ93097 391 aa10.17□□□□□ -0.78
SMCHD1-204ENST00000581226 SLC4A3P48751 1232 aa10.16□□□□□ -0.78
SMCHD1-204ENST00000581226 LRCH3Q96II8 777 aa10.16□□□□□ -0.78
SMCHD1-204ENST00000581226 KDM4CQ9H3R0 1056 aa10.16□□□□□ -0.78
SMCHD1-204ENST00000581226 PLA2G2EQ9NZK7 142 aa10.16□□□□□ -0.78
SMCHD1-204ENST00000581226 RNF40O75150 1001 aa10.15□□□□□ -0.78
SMCHD1-204ENST00000581226 SSTR3P32745 418 aaPredicted RBP10.15□□□□□ -0.78
SMCHD1-204ENST00000581226 SLF2Q8IX21 1173 aa10.15□□□□□ -0.78
SMCHD1-204ENST00000581226 FAM217BQ9NTX9 383 aaPredicted RBP10.15□□□□□ -0.78
SMCHD1-204ENST00000581226 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.15□□□□□ -0.78
SMCHD1-204ENST00000581226 DDX11L8A8MPP1 907 aa10.14□□□□□ -0.79
SMCHD1-204ENST00000581226 SULF1Q8IWU6 871 aa10.14□□□□□ -0.79
SMCHD1-204ENST00000581226 KCTD12Q96CX2 325 aaKnown RBP10.13□□□□□ -0.79
SMCHD1-204ENST00000581226 SOWAHBA6NEL2 793 aa10.12□□□□□ -0.79
SMCHD1-204ENST00000581226 RSPH4AQ5TD94 716 aa10.12□□□□□ -0.79
SMCHD1-204ENST00000581226 RDH13Q8NBN7 331 aa10.12□□□□□ -0.79
SMCHD1-204ENST00000581226 HCSTQ9UBK5 93 aa10.12□□□□□ -0.79
SMCHD1-204ENST00000581226 MS4A1P11836 297 aa10.11□□□□□ -0.79
SMCHD1-204ENST00000581226 BCAMP50895 628 aa10.11□□□□□ -0.79
SMCHD1-204ENST00000581226 HPS5Q9UPZ3 1129 aa10.09□□□□□ -0.79
SMCHD1-204ENST00000581226 SLC10A3P09131 477 aa10.08□□□□□ -0.8
SMCHD1-204ENST00000581226 CD46P15529 392 aa10.08□□□□□ -0.8
SMCHD1-204ENST00000581226 PPP4CP60510 307 aa10.08□□□□□ -0.8
SMCHD1-204ENST00000581226 THSD4Q6ZMP0 1018 aa10.08□□□□□ -0.8
SMCHD1-204ENST00000581226 TSR3Q9UJK0 312 aaKnown RBP10.08□□□□□ -0.8
SMCHD1-204ENST00000581226 IL27Q8NEV9 243 aa10.07□□□□□ -0.8
SMCHD1-204ENST00000581226 NECTIN2Q92692 538 aa10.07□□□□□ -0.8
SMCHD1-204ENST00000581226 BEGAINQ9BUH8 593 aa10.07□□□□□ -0.8
SMCHD1-204ENST00000581226 FAM117AQ9C073 453 aa10.07□□□□□ -0.8
SMCHD1-204ENST00000581226 DDRGK1Q96HY6 314 aa10.05□□□□□ -0.8
SMCHD1-204ENST00000581226 GCGRP47871 477 aa10.04□□□□□ -0.8
SMCHD1-204ENST00000581226 PTPN5P54829 565 aa10.04□□□□□ -0.8
SMCHD1-204ENST00000581226 WBP1LQ9NX94 342 aa10.04□□□□□ -0.8
SMCHD1-204ENST00000581226 CFHP08603 1231 aa10.03□□□□□ -0.8
SMCHD1-204ENST00000581226 NUTM1Q86Y26 1132 aa10.02□□□□□ -0.81
SMCHD1-204ENST00000581226 PLEKHG3A1L390 1219 aa10.01□□□□□ -0.81
SMCHD1-204ENST00000581226 KMT5BQ4FZB7 885 aa10.01□□□□□ -0.81
SMCHD1-204ENST00000581226 KDM4AO75164 1064 aa10□□□□□ -0.81
SMCHD1-204ENST00000581226 PRR14Q9BWN1 585 aa10□□□□□ -0.81
SMCHD1-204ENST00000581226 APLP1P51693 650 aa9.99□□□□□ -0.81
SMCHD1-204ENST00000581226 SPIRE2Q8WWL2 714 aa9.99□□□□□ -0.81
SMCHD1-204ENST00000581226 DIXDC1Q155Q3 683 aa9.98□□□□□ -0.81
SMCHD1-204ENST00000581226 TBC1D2Q9BYX2 928 aa9.98□□□□□ -0.81
SMCHD1-204ENST00000581226 ACTN4O43707 911 aaKnown RBP9.97□□□□□ -0.81
SMCHD1-204ENST00000581226 NYAP1Q6ZVC0 841 aa9.97□□□□□ -0.81
SMCHD1-204ENST00000581226 RSPH6AQ9H0K4 717 aa9.97□□□□□ -0.81
SMCHD1-204ENST00000581226 USP46P62068 366 aa9.96□□□□□ -0.82
SMCHD1-204ENST00000581226 FUT2Q10981 343 aa9.96□□□□□ -0.82
SMCHD1-204ENST00000581226 TMEM132AQ24JP5 1023 aa9.95□□□□□ -0.82
SMCHD1-204ENST00000581226 GRIPAP1Q4V328 841 aa9.95□□□□□ -0.82
SMCHD1-204ENST00000581226 ATP6V1AP38606 617 aa9.94□□□□□ -0.82
SMCHD1-204ENST00000581226 HOXA2O43364 376 aa9.93□□□□□ -0.82
SMCHD1-204ENST00000581226 MYSM1Q5VVJ2 828 aa9.93□□□□□ -0.82
SMCHD1-204ENST00000581226 PCDHB3Q9Y5E6 796 aa9.93□□□□□ -0.82
SMCHD1-204ENST00000581226 MOXD2PA6NHM9 499 aa9.92□□□□□ -0.82
SMCHD1-204ENST00000581226 NDUFV2P19404 249 aa9.92□□□□□ -0.82
SMCHD1-204ENST00000581226 PUS10Q3MIT2 529 aaKnown RBP9.92□□□□□ -0.82
SMCHD1-204ENST00000581226 SH3D19Q5HYK7 790 aa9.92□□□□□ -0.82
SMCHD1-204ENST00000581226 POLR3EQ9NVU0 708 aa9.92□□□□□ -0.82
SMCHD1-204ENST00000581226 SKIV2LQ15477 1246 aaKnown RBP9.91□□□□□ -0.82
SMCHD1-204ENST00000581226 RIC3Q7Z5B4 369 aa9.91□□□□□ -0.82
SMCHD1-204ENST00000581226 ATP1B4Q9UN42 357 aaPredicted RBP9.91□□□□□ -0.82
SMCHD1-204ENST00000581226 HLA-CQ95604 372 aa9.9□□□□□ -0.82
SMCHD1-204ENST00000581226 MORN1Q5T089 497 aa9.89□□□□□ -0.83
SMCHD1-204ENST00000581226 RSBN1LQ6PCB5 846 aaPredicted RBP9.89□□□□□ -0.83
SMCHD1-204ENST00000581226 GOPCQ9HD26 462 aa9.89□□□□□ -0.83
SMCHD1-204ENST00000581226 SPTLC1O15269 473 aa9.88□□□□□ -0.83
SMCHD1-204ENST00000581226 FDX1P10109 184 aa9.88□□□□□ -0.83
SMCHD1-204ENST00000581226 CLK2P49760 499 aaKnown RBP9.88□□□□□ -0.83
SMCHD1-204ENST00000581226 COPS2P61201 443 aa9.88□□□□□ -0.83
SMCHD1-204ENST00000581226 GUCA2AQ02747 115 aa9.88□□□□□ -0.83
SMCHD1-204ENST00000581226 BLOC1S3Q6QNY0 202 aa9.88□□□□□ -0.83
SMCHD1-204ENST00000581226 PCMTD1Q96MG8 357 aaPredicted RBP9.88□□□□□ -0.83
SMCHD1-204ENST00000581226 NR1I2O75469 434 aa9.87□□□□□ -0.83
SMCHD1-204ENST00000581226 GJA5P36382 358 aa9.87□□□□□ -0.83
SMCHD1-204ENST00000581226 LIMD1Q9UGP4 676 aa9.87□□□□□ -0.83
SMCHD1-204ENST00000581226 SLC27A5Q9Y2P5 690 aa9.87□□□□□ -0.83
SMCHD1-204ENST00000581226 CSPP1Q1MSJ5 1256 aa9.86□□□□□ -0.83
SMCHD1-204ENST00000581226 PROCA1Q8NCQ7 364 aaPredicted RBP9.86□□□□□ -0.83
SMCHD1-204ENST00000581226 MTRQ99707 1265 aa9.86□□□□□ -0.83
SMCHD1-204ENST00000581226 SCUBE3Q8IX30 993 aa9.85□□□□□ -0.83
SMCHD1-204ENST00000581226 PCDHGC3Q9UN70 934 aa9.85□□□□□ -0.83
SMCHD1-204ENST00000581226 PCDHB15Q9Y5E8 787 aa9.84□□□□□ -0.83
SMCHD1-204ENST00000581226 TUSC1Q2TAM9 212 aa9.83□□□□□ -0.84
SMCHD1-204ENST00000581226 Q3C1V9 767 aa9.83□□□□□ -0.84
SMCHD1-204ENST00000581226 TJAP1Q5JTD0 557 aa9.83□□□□□ -0.84
SMCHD1-204ENST00000581226 IL21Q9HBE4 155 aa9.83□□□□□ -0.84
SMCHD1-204ENST00000581226 C6orf229H3BNL8 230 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms