RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 MED1Q15648 1581 aaPredicted RBP24.12■■□□□ 1.45
CLK3-211ENST00000563297 MYO5BQ9ULV0 1848 aa24.12■■□□□ 1.45
CLK3-211ENST00000563297 HDGFP51858 240 aaKnown RBP24.12■■□□□ 1.45
CLK3-211ENST00000563297 TMEM94Q12767 1356 aa24.12■■□□□ 1.45
CLK3-211ENST00000563297 ZFYVE9O95405 1425 aa24.11■■□□□ 1.45
CLK3-211ENST00000563297 RBM33Q96EV2 1170 aaKnown RBP24.1■■□□□ 1.45
CLK3-211ENST00000563297 TMEM131LA2VDJ0 1609 aa24.1■■□□□ 1.45
CLK3-211ENST00000563297 RIMS2Q9UQ26 1411 aa24.1■■□□□ 1.45
CLK3-211ENST00000563297 E9PCH4 1651 aa24.09■■□□□ 1.45
CLK3-211ENST00000563297 NUP155O75694 1391 aa24.09■■□□□ 1.45
CLK3-211ENST00000563297 CHGAP10645 457 aaKnown RBP24.09■■□□□ 1.45
CLK3-211ENST00000563297 PLEKHG1Q9ULL1 1385 aa24.07■■□□□ 1.44
CLK3-211ENST00000563297 PPP1R15AO75807 674 aaPredicted RBP24.07■■□□□ 1.44
CLK3-211ENST00000563297 IQGAP3Q86VI3 1631 aa24.06■■□□□ 1.44
CLK3-211ENST00000563297 FAM135BQ49AJ0 1406 aa24.05■■□□□ 1.44
CLK3-211ENST00000563297 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.05■■□□□ 1.44
CLK3-211ENST00000563297 TBX22Q9Y458 520 aa24.04■■□□□ 1.44
CLK3-211ENST00000563297 NUTM2DQ5VT03 806 aaPredicted RBP24.03■■□□□ 1.44
CLK3-211ENST00000563297 NWD1Q149M9 1564 aa24.02■■□□□ 1.44
CLK3-211ENST00000563297 NKTRP30414 1462 aaKnown RBP24.01■■□□□ 1.43
CLK3-211ENST00000563297 CHD2O14647 1828 aaKnown RBP24.01■■□□□ 1.43
CLK3-211ENST00000563297 PHF23Q9BUL5 403 aaPredicted RBP24■■□□□ 1.43
CLK3-211ENST00000563297 ADAMTS13Q76LX8 1427 aa23.96■■□□□ 1.43
CLK3-211ENST00000563297 MSH6P52701 1360 aa23.96■■□□□ 1.43
CLK3-211ENST00000563297 SLAIN2Q9P270 581 aa23.95■■□□□ 1.42
CLK3-211ENST00000563297 RRBP1Q9P2E9 1410 aaKnown RBP23.93■■□□□ 1.42
CLK3-211ENST00000563297 ROBO1Q9Y6N7 1651 aa23.92■■□□□ 1.42
CLK3-211ENST00000563297 NCOA3Q9Y6Q9 1424 aa23.9■■□□□ 1.42
CLK3-211ENST00000563297 PIK3R4Q99570 1358 aa23.9■■□□□ 1.42
CLK3-211ENST00000563297 RGS17Q9UGC6 210 aaPredicted RBP23.89■■□□□ 1.41
CLK3-211ENST00000563297 DIP2AQ14689 1571 aa23.87■■□□□ 1.41
CLK3-211ENST00000563297 NAIPQ13075 1403 aa23.87■■□□□ 1.41
CLK3-211ENST00000563297 AMOTL2Q9Y2J4 779 aa23.87■■□□□ 1.41
CLK3-211ENST00000563297 SPHKAPQ2M3C7 1700 aa23.87■■□□□ 1.41
CLK3-211ENST00000563297 ZNF326Q5BKZ1 582 aaKnown RBP23.85■■□□□ 1.41
CLK3-211ENST00000563297 C14orf37Q86TY3 774 aa23.85■■□□□ 1.41
CLK3-211ENST00000563297 C19orf44Q9H6X5 657 aa23.85■■□□□ 1.41
CLK3-211ENST00000563297 PTPRUQ92729 1446 aa23.84■■□□□ 1.41
CLK3-211ENST00000563297 TRPM2O94759 1503 aa23.82■■□□□ 1.4
CLK3-211ENST00000563297 CADPS2Q86UW7 1296 aa23.81■■□□□ 1.4
CLK3-211ENST00000563297 ATF3P18847 181 aa23.8■■□□□ 1.4
CLK3-211ENST00000563297 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.79■■□□□ 1.4
CLK3-211ENST00000563297 TRIM52Q96A61 297 aa23.79■■□□□ 1.4
CLK3-211ENST00000563297 PHLPP1O60346 1717 aa23.79■■□□□ 1.4
CLK3-211ENST00000563297 NRXN3Q9Y4C0 1643 aa23.78■■□□□ 1.4
CLK3-211ENST00000563297 SETBP1Q9Y6X0 1596 aa23.78■■□□□ 1.4
CLK3-211ENST00000563297 CLTCL1P53675 1640 aa23.77■■□□□ 1.4
CLK3-211ENST00000563297 METP08581 1390 aa23.76■■□□□ 1.39
CLK3-211ENST00000563297 HFM1A2PYH4 1435 aa23.76■■□□□ 1.39
CLK3-211ENST00000563297 JCADQ9P266 1359 aa23.75■■□□□ 1.39
CLK3-211ENST00000563297 POTEAQ6S8J7 498 aa23.74■■□□□ 1.39
CLK3-211ENST00000563297 NEXMIFQ5QGS0 1516 aa23.73■■□□□ 1.39
CLK3-211ENST00000563297 KIF1BO60333 1816 aa23.73■■□□□ 1.39
CLK3-211ENST00000563297 SLC4A1APQ9BWU0 796 aaKnown RBP23.72■■□□□ 1.39
CLK3-211ENST00000563297 XRN1Q8IZH2 1706 aaKnown RBP23.71■■□□□ 1.39
CLK3-211ENST00000563297 COL16A1Q07092 1604 aaPredicted RBP23.7■■□□□ 1.39
CLK3-211ENST00000563297 BRINP3Q76B58 766 aa23.7■■□□□ 1.38
CLK3-211ENST00000563297 VGFO15240 615 aaPredicted RBP23.68■■□□□ 1.38
CLK3-211ENST00000563297 DCCP43146 1447 aa23.67■■□□□ 1.38
CLK3-211ENST00000563297 AHDC1Q5TGY3 1603 aaPredicted RBP23.66■■□□□ 1.38
CLK3-211ENST00000563297 RPGRIP1LQ68CZ1 1315 aa23.65■■□□□ 1.38
CLK3-211ENST00000563297 SPATA31A6Q5VVP1 1343 aa23.64■■□□□ 1.38
CLK3-211ENST00000563297 FOXD1Q16676 465 aa23.63■■□□□ 1.37
CLK3-211ENST00000563297 MST1RQ04912 1400 aa23.62■■□□□ 1.37
CLK3-211ENST00000563297 ADGRL3Q9HAR2 1447 aa23.59■■□□□ 1.37
CLK3-211ENST00000563297 LRP6O75581 1613 aa23.59■■□□□ 1.37
CLK3-211ENST00000563297 ASXL1Q8IXJ9 1541 aa23.58■■□□□ 1.36
CLK3-211ENST00000563297 SHPRHQ149N8 1683 aa23.57■■□□□ 1.36
CLK3-211ENST00000563297 MEX3CQ5U5Q3 659 aaKnown RBP23.57■■□□□ 1.36
CLK3-211ENST00000563297 SETD1AO15047 1707 aaKnown RBP23.56■■□□□ 1.36
CLK3-211ENST00000563297 MPHOSPH9Q99550 1183 aa23.56■■□□□ 1.36
CLK3-211ENST00000563297 ROBO2Q9HCK4 1378 aa23.55■■□□□ 1.36
CLK3-211ENST00000563297 DDX17Q92841 729 aaKnown RBP23.55■■□□□ 1.36
CLK3-211ENST00000563297 PPLO60437 1756 aa23.55■■□□□ 1.36
CLK3-211ENST00000563297 NALCNQ8IZF0 1738 aa23.54■■□□□ 1.36
CLK3-211ENST00000563297 SETD5Q9C0A6 1442 aa23.54■■□□□ 1.36
CLK3-211ENST00000563297 LRRC59Q96AG4 307 aaKnown RBP23.54■■□□□ 1.36
CLK3-211ENST00000563297 PTCH1Q13635 1447 aa23.53■■□□□ 1.36
CLK3-211ENST00000563297 NUTM2BA6NNL0 878 aaPredicted RBP23.53■■□□□ 1.36
CLK3-211ENST00000563297 NUTM2EB1AL46 878 aaPredicted RBP23.53■■□□□ 1.36
CLK3-211ENST00000563297 NUTM2AQ8IVF1 878 aaPredicted RBP23.53■■□□□ 1.36
CLK3-211ENST00000563297 RGL3Q3MIN7 710 aa23.52■■□□□ 1.36
CLK3-211ENST00000563297 ZNF772Q68DY9 489 aaPredicted RBP23.52■■□□□ 1.36
CLK3-211ENST00000563297 NHSL1Q5SYE7 1610 aa23.51■■□□□ 1.35
CLK3-211ENST00000563297 ADGRF5Q8IZF2 1346 aa23.51■■□□□ 1.35
CLK3-211ENST00000563297 C1orf167Q5SNV9 1468 aa23.5■■□□□ 1.35
CLK3-211ENST00000563297 CCDC144AA2RUR9 1427 aa23.5■■□□□ 1.35
CLK3-211ENST00000563297 PRAG1Q86YV5 1406 aa23.5■■□□□ 1.35
CLK3-211ENST00000563297 ORAI2Q96SN7 254 aa23.48■■□□□ 1.35
CLK3-211ENST00000563297 SPATA31E1Q6ZUB1 1445 aa23.47■■□□□ 1.35
CLK3-211ENST00000563297 PNPLA6Q8IY17 1366 aa23.43■■□□□ 1.34
CLK3-211ENST00000563297 ANKRD30BQ9BXX2 1392 aa23.43■■□□□ 1.34
CLK3-211ENST00000563297 ACIN1Q9UKV3 1341 aaKnown RBP23.42■■□□□ 1.34
CLK3-211ENST00000563297 STK26Q9P289 416 aa23.42■■□□□ 1.34
CLK3-211ENST00000563297 AFF2P51816 1311 aa23.41■■□□□ 1.34
CLK3-211ENST00000563297 SOS2Q07890 1332 aaPredicted RBP23.41■■□□□ 1.34
CLK3-211ENST00000563297 RXRBP28702 533 aa23.41■■□□□ 1.34
CLK3-211ENST00000563297 TMEM132EQ6IEE7 984 aa23.4■■□□□ 1.34
CLK3-211ENST00000563297 WAPLQ7Z5K2 1190 aa23.4■■□□□ 1.34
CLK3-211ENST00000563297 LAMC1P11047 1609 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms