RNA–Protein interactions for RNA: ENST00000544501.1

YBX3-214, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 181 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-214ENST00000544501 ZFRQ96KR1 1074 aaKnown RBP5.24□□□□□ -1.57
YBX3-214ENST00000544501 KDM4CQ9H3R0 1056 aa5.24□□□□□ -1.57
YBX3-214ENST00000544501 GOLGA8CPA6NN73 597 aa5.23□□□□□ -1.57
YBX3-214ENST00000544501 RSPH4AQ5TD94 716 aa5.23□□□□□ -1.57
YBX3-214ENST00000544501 GIGYF2Q6Y7W6 1299 aaKnown RBP5.23□□□□□ -1.57
YBX3-214ENST00000544501 REPIN1Q9BWE0 567 aaKnown RBP5.23□□□□□ -1.57
YBX3-214ENST00000544501 FAM217BQ9NTX9 383 aaPredicted RBP5.23□□□□□ -1.57
YBX3-214ENST00000544501 SSTR3P32745 418 aaPredicted RBP5.22□□□□□ -1.57
YBX3-214ENST00000544501 SWT1Q5T5J6 900 aaKnown RBP5.22□□□□□ -1.57
YBX3-214ENST00000544501 SAMD7Q7Z3H4 446 aa5.22□□□□□ -1.57
YBX3-214ENST00000544501 SLF2Q8IX21 1173 aa5.22□□□□□ -1.57
YBX3-214ENST00000544501 ANKK1Q8NFD2 765 aa5.22□□□□□ -1.57
YBX3-214ENST00000544501 NLRP7Q8WX94 980 aa5.22□□□□□ -1.57
YBX3-214ENST00000544501 NECTIN2Q92692 538 aa5.22□□□□□ -1.57
YBX3-214ENST00000544501 GPBP1L1Q9HC44 474 aaPredicted RBP5.22□□□□□ -1.57
YBX3-214ENST00000544501 DDRGK1Q96HY6 314 aa5.21□□□□□ -1.58
YBX3-214ENST00000544501 LRCH3Q96II8 777 aa5.21□□□□□ -1.58
YBX3-214ENST00000544501 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.21□□□□□ -1.58
YBX3-214ENST00000544501 SOWAHBA6NEL2 793 aa5.2□□□□□ -1.58
YBX3-214ENST00000544501 WNT2BQ93097 391 aa5.2□□□□□ -1.58
YBX3-214ENST00000544501 DDX11L8A8MPP1 907 aa5.19□□□□□ -1.58
YBX3-214ENST00000544501 MS4A1P11836 297 aa5.19□□□□□ -1.58
YBX3-214ENST00000544501 CD46P15529 392 aa5.19□□□□□ -1.58
YBX3-214ENST00000544501 DIXDC1Q155Q3 683 aa5.18□□□□□ -1.58
YBX3-214ENST00000544501 BEGAINQ9BUH8 593 aa5.18□□□□□ -1.58
YBX3-214ENST00000544501 FAM117AQ9C073 453 aa5.18□□□□□ -1.58
YBX3-214ENST00000544501 TSR3Q9UJK0 312 aaKnown RBP5.18□□□□□ -1.58
YBX3-214ENST00000544501 MYT1LQ9UL68 1186 aa5.18□□□□□ -1.58
YBX3-214ENST00000544501 SLC10A3P09131 477 aa5.17□□□□□ -1.58
YBX3-214ENST00000544501 GCGRP47871 477 aa5.17□□□□□ -1.58
YBX3-214ENST00000544501 PPP4CP60510 307 aa5.17□□□□□ -1.58
YBX3-214ENST00000544501 TMEM132AQ24JP5 1023 aa5.17□□□□□ -1.58
YBX3-214ENST00000544501 THSD4Q6ZMP0 1018 aa5.17□□□□□ -1.58
YBX3-214ENST00000544501 NYAP1Q6ZVC0 841 aa5.17□□□□□ -1.58
YBX3-214ENST00000544501 SPNS2Q8IVW8 549 aa5.17□□□□□ -1.58
YBX3-214ENST00000544501 RDH13Q8NBN7 331 aa5.17□□□□□ -1.58
YBX3-214ENST00000544501 PRR14Q9BWN1 585 aa5.17□□□□□ -1.58
YBX3-214ENST00000544501 RNF40O75150 1001 aa5.16□□□□□ -1.58
YBX3-214ENST00000544501 BCAMP50895 628 aa5.16□□□□□ -1.58
YBX3-214ENST00000544501 IL27Q8NEV9 243 aa5.16□□□□□ -1.58
YBX3-214ENST00000544501 KCTD12Q96CX2 325 aaKnown RBP5.16□□□□□ -1.58
YBX3-214ENST00000544501 RSPH6AQ9H0K4 717 aa5.16□□□□□ -1.58
YBX3-214ENST00000544501 GOPCQ9HD26 462 aa5.16□□□□□ -1.58
YBX3-214ENST00000544501 HPS5Q9UPZ3 1129 aa5.16□□□□□ -1.58
YBX3-214ENST00000544501 PLEKHG3A1L390 1219 aa5.15□□□□□ -1.59
YBX3-214ENST00000544501 USP46P62068 366 aa5.15□□□□□ -1.59
YBX3-214ENST00000544501 KMT5BQ4FZB7 885 aa5.15□□□□□ -1.59
YBX3-214ENST00000544501 NUTM1Q86Y26 1132 aa5.15□□□□□ -1.59
YBX3-214ENST00000544501 ACTN4O43707 911 aaKnown RBP5.14□□□□□ -1.59
YBX3-214ENST00000544501 KDM4AO75164 1064 aa5.14□□□□□ -1.59
YBX3-214ENST00000544501 CFHP08603 1231 aa5.14□□□□□ -1.59
YBX3-214ENST00000544501 GJA5P36382 358 aa5.14□□□□□ -1.59
YBX3-214ENST00000544501 GRIPAP1Q4V328 841 aa5.14□□□□□ -1.59
YBX3-214ENST00000544501 SPIRE2Q8WWL2 714 aa5.14□□□□□ -1.59
YBX3-214ENST00000544501 SH3D19Q5HYK7 790 aa5.13□□□□□ -1.59
YBX3-214ENST00000544501 RNF166Q96A37 237 aaPredicted RBP5.13□□□□□ -1.59
YBX3-214ENST00000544501 TBC1D2Q9BYX2 928 aa5.13□□□□□ -1.59
YBX3-214ENST00000544501 WBP1LQ9NX94 342 aa5.13□□□□□ -1.59
YBX3-214ENST00000544501 ATP6V1AP38606 617 aa5.12□□□□□ -1.59
YBX3-214ENST00000544501 SKIV2LQ15477 1246 aaKnown RBP5.12□□□□□ -1.59
YBX3-214ENST00000544501 TUSC1Q2TAM9 212 aa5.12□□□□□ -1.59
YBX3-214ENST00000544501 HCSTQ9UBK5 93 aa5.12□□□□□ -1.59
YBX3-214ENST00000544501 HOXA2O43364 376 aa5.11□□□□□ -1.59
YBX3-214ENST00000544501 APLP1P51693 650 aa5.11□□□□□ -1.59
YBX3-214ENST00000544501 PTPN5P54829 565 aa5.11□□□□□ -1.59
YBX3-214ENST00000544501 FUT2Q10981 343 aa5.11□□□□□ -1.59
YBX3-214ENST00000544501 MMRN1Q13201 1228 aa5.11□□□□□ -1.59
YBX3-214ENST00000544501 MYSM1Q5VVJ2 828 aa5.11□□□□□ -1.59
YBX3-214ENST00000544501 SPTLC1O15269 473 aa5.1□□□□□ -1.59
YBX3-214ENST00000544501 MORN1Q5T089 497 aa5.09□□□□□ -1.59
YBX3-214ENST00000544501 RSBN1LQ6PCB5 846 aaPredicted RBP5.09□□□□□ -1.59
YBX3-214ENST00000544501 RIC3Q7Z5B4 369 aa5.09□□□□□ -1.59
YBX3-214ENST00000544501 PCMTD1Q96MG8 357 aaPredicted RBP5.09□□□□□ -1.59
YBX3-214ENST00000544501 SALL2Q9Y467 1007 aaPredicted RBP5.09□□□□□ -1.59
YBX3-214ENST00000544501 PCDHB3Q9Y5E6 796 aa5.09□□□□□ -1.59
YBX3-214ENST00000544501 MOXD2PA6NHM9 499 aa5.08□□□□□ -1.6
YBX3-214ENST00000544501 NR1I2O75469 434 aa5.08□□□□□ -1.6
YBX3-214ENST00000544501 CLK2P49760 499 aaKnown RBP5.08□□□□□ -1.6
YBX3-214ENST00000544501 Q3C1V9 767 aa5.08□□□□□ -1.6
YBX3-214ENST00000544501 FDX1P10109 184 aa5.07□□□□□ -1.6
YBX3-214ENST00000544501 NDUFV2P19404 249 aa5.07□□□□□ -1.6
YBX3-214ENST00000544501 PRPF38BQ5VTL8 546 aaKnown RBP5.07□□□□□ -1.6
YBX3-214ENST00000544501 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.07□□□□□ -1.6
YBX3-214ENST00000544501 POLR3EQ9NVU0 708 aa5.07□□□□□ -1.6
YBX3-214ENST00000544501 SPDYE5A6NIY4 337 aa5.06□□□□□ -1.6
YBX3-214ENST00000544501 PUS10Q3MIT2 529 aaKnown RBP5.06□□□□□ -1.6
YBX3-214ENST00000544501 SCUBE3Q8IX30 993 aa5.06□□□□□ -1.6
YBX3-214ENST00000544501 LIMD1Q9UGP4 676 aa5.06□□□□□ -1.6
YBX3-214ENST00000544501 SLC27A5Q9Y2P5 690 aa5.06□□□□□ -1.6
YBX3-214ENST00000544501 LILRB3O75022 631 aa5.05□□□□□ -1.6
YBX3-214ENST00000544501 TJAP1Q5JTD0 557 aa5.05□□□□□ -1.6
YBX3-214ENST00000544501 PPP2R2DQ66LE6 453 aa5.05□□□□□ -1.6
YBX3-214ENST00000544501 BLOC1S3Q6QNY0 202 aa5.05□□□□□ -1.6
YBX3-214ENST00000544501 PROCA1Q8NCQ7 364 aaPredicted RBP5.05□□□□□ -1.6
YBX3-214ENST00000544501 MTRQ99707 1265 aa5.05□□□□□ -1.6
YBX3-214ENST00000544501 ZBTB3Q9H5J0 574 aa5.05□□□□□ -1.6
YBX3-214ENST00000544501 IL21Q9HBE4 155 aa5.05□□□□□ -1.6
YBX3-214ENST00000544501 PCDHGC3Q9UN70 934 aa5.05□□□□□ -1.6
YBX3-214ENST00000544501 PCDHB15Q9Y5E8 787 aa5.05□□□□□ -1.6
YBX3-214ENST00000544501 ZPR1O75312 459 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms