RNA–Protein interactions for RNA: ENST00000520451.1

CSMD1-207, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 2

Gene CSMD1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-207ENST00000520451 TMEM94Q12767 1356 aa23.23■■□□□ 1.31
CSMD1-207ENST00000520451 ZFYVE9O95405 1425 aa23.23■■□□□ 1.31
CSMD1-207ENST00000520451 IQGAP3Q86VI3 1631 aa23.22■■□□□ 1.31
CSMD1-207ENST00000520451 PPP1R15AO75807 674 aaPredicted RBP23.21■■□□□ 1.31
CSMD1-207ENST00000520451 RIMS2Q9UQ26 1411 aa23.21■■□□□ 1.31
CSMD1-207ENST00000520451 TMEM131LA2VDJ0 1609 aa23.21■■□□□ 1.31
CSMD1-207ENST00000520451 E9PCH4 1651 aa23.21■■□□□ 1.31
CSMD1-207ENST00000520451 MYO5BQ9ULV0 1848 aa23.2■■□□□ 1.3
CSMD1-207ENST00000520451 NUP155O75694 1391 aa23.2■■□□□ 1.3
CSMD1-207ENST00000520451 CHGAP10645 457 aaKnown RBP23.2■■□□□ 1.3
CSMD1-207ENST00000520451 PROSER2Q86WR7 435 aaPredicted RBP23.2■■□□□ 1.3
CSMD1-207ENST00000520451 PLEKHG1Q9ULL1 1385 aa23.19■■□□□ 1.3
CSMD1-207ENST00000520451 HDGFP51858 240 aaKnown RBP23.19■■□□□ 1.3
CSMD1-207ENST00000520451 NWD1Q149M9 1564 aa23.18■■□□□ 1.3
CSMD1-207ENST00000520451 NKTRP30414 1462 aaKnown RBP23.17■■□□□ 1.3
CSMD1-207ENST00000520451 RBM33Q96EV2 1170 aaKnown RBP23.17■■□□□ 1.3
CSMD1-207ENST00000520451 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.14■■□□□ 1.29
CSMD1-207ENST00000520451 PHF23Q9BUL5 403 aaPredicted RBP23.14■■□□□ 1.29
CSMD1-207ENST00000520451 FAM135BQ49AJ0 1406 aa23.13■■□□□ 1.29
CSMD1-207ENST00000520451 NUTM2DQ5VT03 806 aaPredicted RBP23.11■■□□□ 1.29
CSMD1-207ENST00000520451 TBX22Q9Y458 520 aa23.09■■□□□ 1.29
CSMD1-207ENST00000520451 MSH6P52701 1360 aa23.09■■□□□ 1.29
CSMD1-207ENST00000520451 CHD2O14647 1828 aaKnown RBP23.07■■□□□ 1.28
CSMD1-207ENST00000520451 RRBP1Q9P2E9 1410 aaKnown RBP23.07■■□□□ 1.28
CSMD1-207ENST00000520451 ADAMTS13Q76LX8 1427 aa23.06■■□□□ 1.28
CSMD1-207ENST00000520451 ROBO1Q9Y6N7 1651 aa23.06■■□□□ 1.28
CSMD1-207ENST00000520451 DIP2AQ14689 1571 aa23.05■■□□□ 1.28
CSMD1-207ENST00000520451 SPHKAPQ2M3C7 1700 aa23.02■■□□□ 1.28
CSMD1-207ENST00000520451 SLAIN2Q9P270 581 aa23.01■■□□□ 1.27
CSMD1-207ENST00000520451 PIK3R4Q99570 1358 aa23.01■■□□□ 1.27
CSMD1-207ENST00000520451 C14orf37Q86TY3 774 aa23■■□□□ 1.27
CSMD1-207ENST00000520451 NAIPQ13075 1403 aa22.99■■□□□ 1.27
CSMD1-207ENST00000520451 NCOA3Q9Y6Q9 1424 aa22.99■■□□□ 1.27
CSMD1-207ENST00000520451 TRPM2O94759 1503 aa22.98■■□□□ 1.27
CSMD1-207ENST00000520451 ZNF326Q5BKZ1 582 aaKnown RBP22.98■■□□□ 1.27
CSMD1-207ENST00000520451 PTPRUQ92729 1446 aa22.94■■□□□ 1.26
CSMD1-207ENST00000520451 AMOTL2Q9Y2J4 779 aa22.94■■□□□ 1.26
CSMD1-207ENST00000520451 CLTCL1P53675 1640 aa22.93■■□□□ 1.26
CSMD1-207ENST00000520451 C19orf44Q9H6X5 657 aa22.92■■□□□ 1.26
CSMD1-207ENST00000520451 NRXN3Q9Y4C0 1643 aa22.92■■□□□ 1.26
CSMD1-207ENST00000520451 SETBP1Q9Y6X0 1596 aa22.92■■□□□ 1.26
CSMD1-207ENST00000520451 HFM1A2PYH4 1435 aa22.91■■□□□ 1.26
CSMD1-207ENST00000520451 PHLPP1O60346 1717 aa22.91■■□□□ 1.26
CSMD1-207ENST00000520451 ATF3P18847 181 aa22.91■■□□□ 1.26
CSMD1-207ENST00000520451 CADPS2Q86UW7 1296 aa22.91■■□□□ 1.26
CSMD1-207ENST00000520451 TRIM52Q96A61 297 aa22.91■■□□□ 1.26
CSMD1-207ENST00000520451 RGS17Q9UGC6 210 aaPredicted RBP22.91■■□□□ 1.26
CSMD1-207ENST00000520451 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.9■■□□□ 1.26
CSMD1-207ENST00000520451 JCADQ9P266 1359 aa22.88■■□□□ 1.25
CSMD1-207ENST00000520451 NEXMIFQ5QGS0 1516 aa22.87■■□□□ 1.25
CSMD1-207ENST00000520451 XRN1Q8IZH2 1706 aaKnown RBP22.87■■□□□ 1.25
CSMD1-207ENST00000520451 METP08581 1390 aa22.86■■□□□ 1.25
CSMD1-207ENST00000520451 COL16A1Q07092 1604 aaPredicted RBP22.85■■□□□ 1.25
CSMD1-207ENST00000520451 SLC4A1APQ9BWU0 796 aaKnown RBP22.84■■□□□ 1.25
CSMD1-207ENST00000520451 KIF1BO60333 1816 aa22.84■■□□□ 1.25
CSMD1-207ENST00000520451 DCCP43146 1447 aa22.82■■□□□ 1.24
CSMD1-207ENST00000520451 AHDC1Q5TGY3 1603 aaPredicted RBP22.81■■□□□ 1.24
CSMD1-207ENST00000520451 POTEAQ6S8J7 498 aa22.8■■□□□ 1.24
CSMD1-207ENST00000520451 BRINP3Q76B58 766 aa22.79■■□□□ 1.24
CSMD1-207ENST00000520451 VGFO15240 615 aaPredicted RBP22.77■■□□□ 1.24
CSMD1-207ENST00000520451 MST1RQ04912 1400 aa22.75■■□□□ 1.23
CSMD1-207ENST00000520451 ADGRL3Q9HAR2 1447 aa22.75■■□□□ 1.23
CSMD1-207ENST00000520451 SPATA31A6Q5VVP1 1343 aa22.75■■□□□ 1.23
CSMD1-207ENST00000520451 RPGRIP1LQ68CZ1 1315 aa22.75■■□□□ 1.23
CSMD1-207ENST00000520451 ASXL1Q8IXJ9 1541 aa22.74■■□□□ 1.23
CSMD1-207ENST00000520451 FOXD1Q16676 465 aa22.74■■□□□ 1.23
CSMD1-207ENST00000520451 LRP6O75581 1613 aa22.73■■□□□ 1.23
CSMD1-207ENST00000520451 MEX3CQ5U5Q3 659 aaKnown RBP22.72■■□□□ 1.23
CSMD1-207ENST00000520451 SHPRHQ149N8 1683 aa22.71■■□□□ 1.23
CSMD1-207ENST00000520451 PTCH1Q13635 1447 aa22.71■■□□□ 1.23
CSMD1-207ENST00000520451 NALCNQ8IZF0 1738 aa22.71■■□□□ 1.23
CSMD1-207ENST00000520451 SETD1AO15047 1707 aaKnown RBP22.7■■□□□ 1.22
CSMD1-207ENST00000520451 PPLO60437 1756 aa22.68■■□□□ 1.22
CSMD1-207ENST00000520451 ROBO2Q9HCK4 1378 aa22.68■■□□□ 1.22
CSMD1-207ENST00000520451 CCDC144AA2RUR9 1427 aa22.67■■□□□ 1.22
CSMD1-207ENST00000520451 NHSL1Q5SYE7 1610 aa22.66■■□□□ 1.22
CSMD1-207ENST00000520451 SETD5Q9C0A6 1442 aa22.65■■□□□ 1.22
CSMD1-207ENST00000520451 NUTM2BA6NNL0 878 aaPredicted RBP22.65■■□□□ 1.22
CSMD1-207ENST00000520451 NUTM2EB1AL46 878 aaPredicted RBP22.65■■□□□ 1.22
CSMD1-207ENST00000520451 NUTM2AQ8IVF1 878 aaPredicted RBP22.65■■□□□ 1.22
CSMD1-207ENST00000520451 MPHOSPH9Q99550 1183 aa22.65■■□□□ 1.22
CSMD1-207ENST00000520451 PRAG1Q86YV5 1406 aa22.65■■□□□ 1.22
CSMD1-207ENST00000520451 C1orf167Q5SNV9 1468 aa22.63■■□□□ 1.21
CSMD1-207ENST00000520451 DDX17Q92841 729 aaKnown RBP22.63■■□□□ 1.21
CSMD1-207ENST00000520451 RGL3Q3MIN7 710 aa22.62■■□□□ 1.21
CSMD1-207ENST00000520451 ZNF772Q68DY9 489 aaPredicted RBP22.62■■□□□ 1.21
CSMD1-207ENST00000520451 LRRC59Q96AG4 307 aaKnown RBP22.62■■□□□ 1.21
CSMD1-207ENST00000520451 ADGRF5Q8IZF2 1346 aa22.61■■□□□ 1.21
CSMD1-207ENST00000520451 SPATA31E1Q6ZUB1 1445 aa22.61■■□□□ 1.21
CSMD1-207ENST00000520451 ANKRD30BQ9BXX2 1392 aa22.58■■□□□ 1.21
CSMD1-207ENST00000520451 ORAI2Q96SN7 254 aa22.57■■□□□ 1.2
CSMD1-207ENST00000520451 PNPLA6Q8IY17 1366 aa22.57■■□□□ 1.2
CSMD1-207ENST00000520451 STK26Q9P289 416 aa22.54■■□□□ 1.2
CSMD1-207ENST00000520451 AFF2P51816 1311 aa22.54■■□□□ 1.2
CSMD1-207ENST00000520451 ACIN1Q9UKV3 1341 aaKnown RBP22.54■■□□□ 1.2
CSMD1-207ENST00000520451 IFT172Q9UG01 1749 aa22.54■■□□□ 1.2
CSMD1-207ENST00000520451 LAMC1P11047 1609 aa22.53■■□□□ 1.2
CSMD1-207ENST00000520451 LRPPRCP42704 1394 aaKnown RBP22.51■■□□□ 1.19
CSMD1-207ENST00000520451 CDC42BPGQ6DT37 1551 aa22.51■■□□□ 1.19
CSMD1-207ENST00000520451 TECPR2O15040 1411 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms