RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 NRG2O14511 850 aaPredicted RBP8.62□□□□□ -1.03
NUP54-208ENST00000508604 NKX2-3Q8TAU0 364 aa8.62□□□□□ -1.03
NUP54-208ENST00000508604 TRAF7Q6Q0C0 670 aa8.61□□□□□ -1.03
NUP54-208ENST00000508604 FCHSD2O94868 740 aa8.59□□□□□ -1.03
NUP54-208ENST00000508604 TMEM134Q9H6X4 195 aa8.59□□□□□ -1.03
NUP54-208ENST00000508604 ADGRG1Q9Y653 693 aa8.59□□□□□ -1.03
NUP54-208ENST00000508604 RCCD1A6NED2 376 aa8.58□□□□□ -1.04
NUP54-208ENST00000508604 RSPH4AQ5TD94 716 aa8.57□□□□□ -1.04
NUP54-208ENST00000508604 BLOC1S3Q6QNY0 202 aa8.57□□□□□ -1.04
NUP54-208ENST00000508604 PDZRN3Q9UPQ7 1066 aa8.57□□□□□ -1.04
NUP54-208ENST00000508604 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.56□□□□□ -1.04
NUP54-208ENST00000508604 OATP04181 439 aa8.56□□□□□ -1.04
NUP54-208ENST00000508604 SMYD5Q6GMV2 418 aa8.56□□□□□ -1.04
NUP54-208ENST00000508604 ACTN4O43707 911 aaKnown RBP8.55□□□□□ -1.04
NUP54-208ENST00000508604 CFHP08603 1231 aa8.55□□□□□ -1.04
NUP54-208ENST00000508604 SEMA3EO15041 775 aa8.54□□□□□ -1.04
NUP54-208ENST00000508604 FAM161AQ3B820 660 aa8.53□□□□□ -1.04
NUP54-208ENST00000508604 NR1I2O75469 434 aa8.53□□□□□ -1.04
NUP54-208ENST00000508604 SLC19A1P41440 591 aa8.53□□□□□ -1.04
NUP54-208ENST00000508604 RNF223E7ERA6 249 aa8.52□□□□□ -1.05
NUP54-208ENST00000508604 HIC1Q14526 733 aa8.52□□□□□ -1.05
NUP54-208ENST00000508604 TLL1O43897 1013 aa8.5□□□□□ -1.05
NUP54-208ENST00000508604 ANKLE1Q8NAG6 615 aa8.5□□□□□ -1.05
NUP54-208ENST00000508604 PXYLP1Q8TE99 480 aa8.49□□□□□ -1.05
NUP54-208ENST00000508604 ADH1BP00325 375 aa8.49□□□□□ -1.05
NUP54-208ENST00000508604 S1PR4O95977 384 aa8.47□□□□□ -1.05
NUP54-208ENST00000508604 SLC10A3P09131 477 aa8.47□□□□□ -1.05
NUP54-208ENST00000508604 LCE2BO14633 110 aa8.46□□□□□ -1.05
NUP54-208ENST00000508604 SPRYD7Q5W111 196 aa8.46□□□□□ -1.05
NUP54-208ENST00000508604 METTL3Q86U44 580 aaKnown RBP8.46□□□□□ -1.05
NUP54-208ENST00000508604 ZNF598Q86UK7 904 aaKnown RBP8.46□□□□□ -1.05
NUP54-208ENST00000508604 SLC6A16Q9GZN6 736 aa8.46□□□□□ -1.05
NUP54-208ENST00000508604 GNPATO15228 680 aa8.46□□□□□ -1.06
NUP54-208ENST00000508604 PKDCCQ504Y2 493 aa8.46□□□□□ -1.06
NUP54-208ENST00000508604 ZNF787Q6DD87 383 aa8.46□□□□□ -1.06
NUP54-208ENST00000508604 TESPA1A2RU30 521 aaPredicted RBP8.45□□□□□ -1.06
NUP54-208ENST00000508604 PPEF1O14829 653 aaPredicted RBP8.45□□□□□ -1.06
NUP54-208ENST00000508604 RBM26Q5T8P6 1007 aaKnown RBP8.45□□□□□ -1.06
NUP54-208ENST00000508604 RDH13Q8NBN7 331 aa8.45□□□□□ -1.06
NUP54-208ENST00000508604 PLCB2Q00722 1185 aa8.44□□□□□ -1.06
NUP54-208ENST00000508604 SCUBE3Q8IX30 993 aa8.44□□□□□ -1.06
NUP54-208ENST00000508604 ZNF697Q5TEC3 545 aa8.43□□□□□ -1.06
NUP54-208ENST00000508604 SPSB2Q99619 263 aa8.43□□□□□ -1.06
NUP54-208ENST00000508604 DAXXQ9UER7 740 aaPredicted RBP8.43□□□□□ -1.06
NUP54-208ENST00000508604 DGAT1O75907 488 aa8.42□□□□□ -1.06
NUP54-208ENST00000508604 PRR20EP86478 221 aa8.42□□□□□ -1.06
NUP54-208ENST00000508604 PRR20CP86479 221 aa8.42□□□□□ -1.06
NUP54-208ENST00000508604 PRR20DP86480 221 aa8.42□□□□□ -1.06
NUP54-208ENST00000508604 PRR20BP86481 221 aa8.42□□□□□ -1.06
NUP54-208ENST00000508604 PRR20AP86496 221 aa8.42□□□□□ -1.06
NUP54-208ENST00000508604 PUS10Q3MIT2 529 aaKnown RBP8.42□□□□□ -1.06
NUP54-208ENST00000508604 SULF1Q8IWU6 871 aa8.41□□□□□ -1.06
NUP54-208ENST00000508604 DDX11L8A8MPP1 907 aa8.4□□□□□ -1.06
NUP54-208ENST00000508604 LIAT1Q6ZQX7 453 aa8.4□□□□□ -1.06
NUP54-208ENST00000508604 TRIM67Q6ZTA4 783 aa8.4□□□□□ -1.07
NUP54-208ENST00000508604 EMID1Q96A84 441 aaPredicted RBP8.39□□□□□ -1.07
NUP54-208ENST00000508604 ATP6V1AP38606 617 aa8.38□□□□□ -1.07
NUP54-208ENST00000508604 FAM187AA6NFU0 413 aa8.37□□□□□ -1.07
NUP54-208ENST00000508604 FECHP22830 423 aa8.37□□□□□ -1.07
NUP54-208ENST00000508604 GRIPAP1Q4V328 841 aa8.37□□□□□ -1.07
NUP54-208ENST00000508604 TNFRSF10AO00220 468 aa8.37□□□□□ -1.07
NUP54-208ENST00000508604 FMNL1O95466 1100 aaPredicted RBP8.37□□□□□ -1.07
NUP54-208ENST00000508604 GPIHBP1Q8IV16 184 aa8.37□□□□□ -1.07
NUP54-208ENST00000508604 FUT2Q10981 343 aa8.36□□□□□ -1.07
NUP54-208ENST00000508604 MORN1Q5T089 497 aa8.36□□□□□ -1.07
NUP54-208ENST00000508604 LMOD2Q6P5Q4 547 aa8.36□□□□□ -1.07
NUP54-208ENST00000508604 TULP1O00294 542 aaPredicted RBP8.35□□□□□ -1.07
NUP54-208ENST00000508604 GDF9O60383 454 aa8.35□□□□□ -1.07
NUP54-208ENST00000508604 CD2BP2O95400 341 aaKnown RBP8.35□□□□□ -1.07
NUP54-208ENST00000508604 HAP1P54257 671 aaPredicted RBP8.35□□□□□ -1.07
NUP54-208ENST00000508604 GCGRP47871 477 aa8.34□□□□□ -1.07
NUP54-208ENST00000508604 RPIAP49247 311 aa8.34□□□□□ -1.07
NUP54-208ENST00000508604 MYT1Q01538 1121 aa8.34□□□□□ -1.07
NUP54-208ENST00000508604 FOXC1Q12948 553 aa8.34□□□□□ -1.08
NUP54-208ENST00000508604 PLA2G2CQ5R387 149 aa8.34□□□□□ -1.08
NUP54-208ENST00000508604 GPR37O15354 613 aa8.33□□□□□ -1.08
NUP54-208ENST00000508604 ZBTB24O43167 697 aaPredicted RBP8.32□□□□□ -1.08
NUP54-208ENST00000508604 NLRP7Q8WX94 980 aa8.32□□□□□ -1.08
NUP54-208ENST00000508604 SLC27A5Q9Y2P5 690 aa8.32□□□□□ -1.08
NUP54-208ENST00000508604 FCF1Q9Y324 198 aaKnown RBP8.32□□□□□ -1.08
NUP54-208ENST00000508604 SALL2Q9Y467 1007 aaPredicted RBP8.32□□□□□ -1.08
NUP54-208ENST00000508604 Q3C1V9 767 aa8.3□□□□□ -1.08
NUP54-208ENST00000508604 ZNF775Q96BV0 537 aaPredicted RBP8.3□□□□□ -1.08
NUP54-208ENST00000508604 THAP11Q96EK4 314 aa8.3□□□□□ -1.08
NUP54-208ENST00000508604 CYP4X1Q8N118 509 aa8.29□□□□□ -1.08
NUP54-208ENST00000508604 MSS51Q4VC12 460 aa8.27□□□□□ -1.08
NUP54-208ENST00000508604 BRICD5Q6PL45 260 aa8.27□□□□□ -1.08
NUP54-208ENST00000508604 FAM160A2Q8N612 972 aaPredicted RBP8.27□□□□□ -1.08
NUP54-208ENST00000508604 PHOX2BQ99453 314 aa8.27□□□□□ -1.08
NUP54-208ENST00000508604 PKD2L1Q9P0L9 805 aa8.27□□□□□ -1.08
NUP54-208ENST00000508604 MAP2K5Q13163 448 aa8.26□□□□□ -1.09
NUP54-208ENST00000508604 TTC24A2A3L6 582 aaPredicted RBP8.24□□□□□ -1.09
NUP54-208ENST00000508604 PRDM9Q9NQV7 894 aa8.24□□□□□ -1.09
NUP54-208ENST00000508604 AAASQ9NRG9 546 aa8.24□□□□□ -1.09
NUP54-208ENST00000508604 ST8SIA5O15466 376 aa8.24□□□□□ -1.09
NUP54-208ENST00000508604 RNF19BQ6ZMZ0 732 aa8.24□□□□□ -1.09
NUP54-208ENST00000508604 KDM4AO75164 1064 aa8.23□□□□□ -1.09
NUP54-208ENST00000508604 CD46P15529 392 aa8.23□□□□□ -1.09
NUP54-208ENST00000508604 USP46P62068 366 aa8.22□□□□□ -1.09
NUP54-208ENST00000508604 CTC1Q2NKJ3 1217 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms