RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 DNAJB2P25686 324 aa8.35□□□□□ -1.07
CD46-216ENST00000490278 SSTR3P32745 418 aaPredicted RBP8.35□□□□□ -1.07
CD46-216ENST00000490278 VPS9D1Q9Y2B5 631 aa8.35□□□□□ -1.07
CD46-216ENST00000490278 FAM217BQ9NTX9 383 aaPredicted RBP8.34□□□□□ -1.07
CD46-216ENST00000490278 HCSTQ9UBK5 93 aa8.34□□□□□ -1.07
CD46-216ENST00000490278 PLEKHG3A1L390 1219 aa8.33□□□□□ -1.08
CD46-216ENST00000490278 TK2O00142 265 aa8.32□□□□□ -1.08
CD46-216ENST00000490278 TMEM134Q9H6X4 195 aa8.32□□□□□ -1.08
CD46-216ENST00000490278 GTF3C3Q9Y5Q9 886 aa8.31□□□□□ -1.08
CD46-216ENST00000490278 BEGAINQ9BUH8 593 aa8.3□□□□□ -1.08
CD46-216ENST00000490278 NBPF3Q9H094 633 aa8.3□□□□□ -1.08
CD46-216ENST00000490278 SEPT9Q9UHD8 586 aaPredicted RBP8.3□□□□□ -1.08
CD46-216ENST00000490278 FAM98CQ17RN3 349 aaKnown RBP8.29□□□□□ -1.08
CD46-216ENST00000490278 SULF1Q8IWU6 871 aa8.29□□□□□ -1.08
CD46-216ENST00000490278 BHMG1C9JSJ3 638 aaPredicted RBP8.28□□□□□ -1.08
CD46-216ENST00000490278 ADGRD1Q6QNK2 874 aa8.28□□□□□ -1.08
CD46-216ENST00000490278 LAPTM4BQ86VI4 370 aa8.28□□□□□ -1.08
CD46-216ENST00000490278 DDX11L8A8MPP1 907 aa8.27□□□□□ -1.09
CD46-216ENST00000490278 HDGFP51858 240 aaKnown RBP8.27□□□□□ -1.09
CD46-216ENST00000490278 CD46P15529 392 aa8.26□□□□□ -1.09
CD46-216ENST00000490278 SWT1Q5T5J6 900 aaKnown RBP8.25□□□□□ -1.09
CD46-216ENST00000490278 MRPL50Q8N5N7 158 aaKnown RBP8.25□□□□□ -1.09
CD46-216ENST00000490278 RSPH6AQ9H0K4 717 aa8.25□□□□□ -1.09
CD46-216ENST00000490278 GOPCQ9HD26 462 aa8.25□□□□□ -1.09
CD46-216ENST00000490278 HRO43593 1189 aa8.24□□□□□ -1.09
CD46-216ENST00000490278 SLC4A3P48751 1232 aa8.24□□□□□ -1.09
CD46-216ENST00000490278 RDH13Q8NBN7 331 aa8.24□□□□□ -1.09
CD46-216ENST00000490278 DIXDC1Q155Q3 683 aa8.23□□□□□ -1.09
CD46-216ENST00000490278 SH3D19Q5HYK7 790 aa8.23□□□□□ -1.09
CD46-216ENST00000490278 RSPH4AQ5TD94 716 aa8.23□□□□□ -1.09
CD46-216ENST00000490278 ZFRQ96KR1 1074 aaKnown RBP8.23□□□□□ -1.09
CD46-216ENST00000490278 STAC3Q96MF2 364 aa8.23□□□□□ -1.09
CD46-216ENST00000490278 SAMD7Q7Z3H4 446 aa8.22□□□□□ -1.09
CD46-216ENST00000490278 SLF2Q8IX21 1173 aa8.22□□□□□ -1.09
CD46-216ENST00000490278 SKIV2LQ15477 1246 aaKnown RBP8.21□□□□□ -1.1
CD46-216ENST00000490278 PCMTD1Q96MG8 357 aaPredicted RBP8.21□□□□□ -1.1
CD46-216ENST00000490278 TBC1D2Q9BYX2 928 aa8.21□□□□□ -1.1
CD46-216ENST00000490278 MYSM1Q5VVJ2 828 aa8.2□□□□□ -1.1
CD46-216ENST00000490278 NUTM1Q86Y26 1132 aa8.2□□□□□ -1.1
CD46-216ENST00000490278 SPIRE2Q8WWL2 714 aa8.2□□□□□ -1.1
CD46-216ENST00000490278 SLC10A3P09131 477 aa8.19□□□□□ -1.1
CD46-216ENST00000490278 GCGRP47871 477 aa8.19□□□□□ -1.1
CD46-216ENST00000490278 GOLGA8CPA6NN73 597 aa8.18□□□□□ -1.1
CD46-216ENST00000490278 RNF40O75150 1001 aa8.18□□□□□ -1.1
CD46-216ENST00000490278 LRCH3Q96II8 777 aa8.18□□□□□ -1.1
CD46-216ENST00000490278 POLR3EQ9NVU0 708 aa8.18□□□□□ -1.1
CD46-216ENST00000490278 KDM4AO75164 1064 aa8.17□□□□□ -1.1
CD46-216ENST00000490278 ANKK1Q8NFD2 765 aa8.17□□□□□ -1.1
CD46-216ENST00000490278 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.17□□□□□ -1.1
CD46-216ENST00000490278 ATP1B4Q9UN42 357 aaPredicted RBP8.17□□□□□ -1.1
CD46-216ENST00000490278 CLK2P49760 499 aaKnown RBP8.16□□□□□ -1.1
CD46-216ENST00000490278 NECTIN2Q92692 538 aa8.16□□□□□ -1.1
CD46-216ENST00000490278 USP46P62068 366 aa8.15□□□□□ -1.1
CD46-216ENST00000490278 RIC3Q7Z5B4 369 aa8.15□□□□□ -1.1
CD46-216ENST00000490278 PROCA1Q8NCQ7 364 aaPredicted RBP8.15□□□□□ -1.1
CD46-216ENST00000490278 MOXD2PA6NHM9 499 aa8.14□□□□□ -1.11
CD46-216ENST00000490278 CFHP08603 1231 aa8.14□□□□□ -1.11
CD46-216ENST00000490278 ERICH6Q7L0X2 663 aa8.14□□□□□ -1.11
CD46-216ENST00000490278 KCTD12Q96CX2 325 aaKnown RBP8.14□□□□□ -1.11
CD46-216ENST00000490278 SOWAHBA6NEL2 793 aa8.13□□□□□ -1.11
CD46-216ENST00000490278 SPTLC1O15269 473 aa8.13□□□□□ -1.11
CD46-216ENST00000490278 RGS20O76081 388 aa8.13□□□□□ -1.11
CD46-216ENST00000490278 RSBN1LQ6PCB5 846 aaPredicted RBP8.13□□□□□ -1.11
CD46-216ENST00000490278 WNT2BQ93097 391 aa8.13□□□□□ -1.11
CD46-216ENST00000490278 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.13□□□□□ -1.11
CD46-216ENST00000490278 LIMD1Q9UGP4 676 aa8.13□□□□□ -1.11
CD46-216ENST00000490278 HOXA2O43364 376 aa8.12□□□□□ -1.11
CD46-216ENST00000490278 NDUFV2P19404 249 aa8.12□□□□□ -1.11
CD46-216ENST00000490278 GJA5P36382 358 aa8.12□□□□□ -1.11
CD46-216ENST00000490278 TUSC1Q2TAM9 212 aa8.12□□□□□ -1.11
CD46-216ENST00000490278 KMT5BQ4FZB7 885 aa8.12□□□□□ -1.11
CD46-216ENST00000490278 BCAMP50895 628 aa8.11□□□□□ -1.11
CD46-216ENST00000490278 PPP4CP60510 307 aa8.11□□□□□ -1.11
CD46-216ENST00000490278 GRIPAP1Q4V328 841 aa8.11□□□□□ -1.11
CD46-216ENST00000490278 HPS5Q9UPZ3 1129 aa8.11□□□□□ -1.11
CD46-216ENST00000490278 FUT2Q10981 343 aa8.1□□□□□ -1.11
CD46-216ENST00000490278 PRR14Q9BWN1 585 aa8.1□□□□□ -1.11
CD46-216ENST00000490278 TSR3Q9UJK0 312 aaKnown RBP8.1□□□□□ -1.11
CD46-216ENST00000490278 TIMELESSQ9UNS1 1208 aa8.1□□□□□ -1.11
CD46-216ENST00000490278 ACTN4O43707 911 aaKnown RBP8.09□□□□□ -1.11
CD46-216ENST00000490278 FDX1P10109 184 aa8.09□□□□□ -1.11
CD46-216ENST00000490278 ATP6V1AP38606 617 aa8.09□□□□□ -1.11
CD46-216ENST00000490278 IFFO2Q5TF58 517 aa8.09□□□□□ -1.11
CD46-216ENST00000490278 IRX2Q9BZI1 471 aaPredicted RBP8.09□□□□□ -1.11
CD46-216ENST00000490278 CSPP1Q1MSJ5 1256 aa8.08□□□□□ -1.12
CD46-216ENST00000490278 C14orf37Q86TY3 774 aa8.08□□□□□ -1.12
CD46-216ENST00000490278 PCDHB15Q9Y5E8 787 aa8.08□□□□□ -1.12
CD46-216ENST00000490278 PRPF38BQ5VTL8 546 aaKnown RBP8.07□□□□□ -1.12
CD46-216ENST00000490278 PPP2R2DQ66LE6 453 aa8.07□□□□□ -1.12
CD46-216ENST00000490278 THSD4Q6ZMP0 1018 aa8.07□□□□□ -1.12
CD46-216ENST00000490278 HLA-CQ95604 372 aa8.07□□□□□ -1.12
CD46-216ENST00000490278 LILRB3O75022 631 aa8.06□□□□□ -1.12
CD46-216ENST00000490278 GUCA2AQ02747 115 aa8.06□□□□□ -1.12
CD46-216ENST00000490278 FLIIQ13045 1269 aa8.06□□□□□ -1.12
CD46-216ENST00000490278 NUTM2BA6NNL0 878 aaPredicted RBP8.05□□□□□ -1.12
CD46-216ENST00000490278 NUTM2EB1AL46 878 aaPredicted RBP8.05□□□□□ -1.12
CD46-216ENST00000490278 RFC5P40937 340 aa8.05□□□□□ -1.12
CD46-216ENST00000490278 PTPN5P54829 565 aa8.05□□□□□ -1.12
CD46-216ENST00000490278 QPCTQ16769 361 aa8.05□□□□□ -1.12
CD46-216ENST00000490278 NUTM2DQ5VT03 806 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms