RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 TMEM131LA2VDJ0 1609 aa21.9■■□□□ 1.1
SNRNP40-203ENST00000463988 RRBP1Q9P2E9 1410 aaKnown RBP21.89■■□□□ 1.1
SNRNP40-203ENST00000463988 RIMS2Q9UQ26 1411 aa21.89■■□□□ 1.09
SNRNP40-203ENST00000463988 PLEKHG1Q9ULL1 1385 aa21.88■■□□□ 1.09
SNRNP40-203ENST00000463988 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.87■■□□□ 1.09
SNRNP40-203ENST00000463988 XIRP1Q702N8 1843 aaKnown RBP21.86■■□□□ 1.09
SNRNP40-203ENST00000463988 MYO5BQ9ULV0 1848 aa21.85■■□□□ 1.09
SNRNP40-203ENST00000463988 PPP1R15AO75807 674 aaPredicted RBP21.85■■□□□ 1.09
SNRNP40-203ENST00000463988 BCANQ96GW7 911 aa21.85■■□□□ 1.09
SNRNP40-203ENST00000463988 TMEM94Q12767 1356 aa21.85■■□□□ 1.09
SNRNP40-203ENST00000463988 NKTRP30414 1462 aaKnown RBP21.84■■□□□ 1.09
SNRNP40-203ENST00000463988 NWD1Q149M9 1564 aa21.83■■□□□ 1.09
SNRNP40-203ENST00000463988 CHGAP10645 457 aaKnown RBP21.83■■□□□ 1.09
SNRNP40-203ENST00000463988 PROSER2Q86WR7 435 aaPredicted RBP21.83■■□□□ 1.09
SNRNP40-203ENST00000463988 TBX22Q9Y458 520 aa21.82■■□□□ 1.08
SNRNP40-203ENST00000463988 SOCS7O14512 581 aa21.81■■□□□ 1.08
SNRNP40-203ENST00000463988 FAM135BQ49AJ0 1406 aa21.8■■□□□ 1.08
SNRNP40-203ENST00000463988 NAIPQ13075 1403 aa21.78■■□□□ 1.08
SNRNP40-203ENST00000463988 MED1Q15648 1581 aaPredicted RBP21.78■■□□□ 1.08
SNRNP40-203ENST00000463988 CHD2O14647 1828 aaKnown RBP21.76■■□□□ 1.07
SNRNP40-203ENST00000463988 PIK3R4Q99570 1358 aa21.75■■□□□ 1.07
SNRNP40-203ENST00000463988 ADAMTS13Q76LX8 1427 aa21.75■■□□□ 1.07
SNRNP40-203ENST00000463988 DIP2AQ14689 1571 aa21.74■■□□□ 1.07
SNRNP40-203ENST00000463988 SPHKAPQ2M3C7 1700 aa21.74■■□□□ 1.07
SNRNP40-203ENST00000463988 MSH6P52701 1360 aa21.74■■□□□ 1.07
SNRNP40-203ENST00000463988 NCOA3Q9Y6Q9 1424 aa21.73■■□□□ 1.07
SNRNP40-203ENST00000463988 RBM33Q96EV2 1170 aaKnown RBP21.73■■□□□ 1.07
SNRNP40-203ENST00000463988 SENP3Q9H4L4 574 aaPredicted RBP21.73■■□□□ 1.07
SNRNP40-203ENST00000463988 NUTM2DQ5VT03 806 aaPredicted RBP21.72■■□□□ 1.07
SNRNP40-203ENST00000463988 HFM1A2PYH4 1435 aa21.72■■□□□ 1.07
SNRNP40-203ENST00000463988 TRPM2O94759 1503 aa21.67■■□□□ 1.06
SNRNP40-203ENST00000463988 SLAIN2Q9P270 581 aa21.67■■□□□ 1.06
SNRNP40-203ENST00000463988 ZNF326Q5BKZ1 582 aaKnown RBP21.66■■□□□ 1.06
SNRNP40-203ENST00000463988 ROBO1Q9Y6N7 1651 aa21.66■■□□□ 1.06
SNRNP40-203ENST00000463988 PHF23Q9BUL5 403 aaPredicted RBP21.65■■□□□ 1.06
SNRNP40-203ENST00000463988 SETBP1Q9Y6X0 1596 aa21.65■■□□□ 1.06
SNRNP40-203ENST00000463988 CLTCL1P53675 1640 aa21.63■■□□□ 1.05
SNRNP40-203ENST00000463988 TRIM52Q96A61 297 aa21.63■■□□□ 1.05
SNRNP40-203ENST00000463988 AMOTL2Q9Y2J4 779 aa21.63■■□□□ 1.05
SNRNP40-203ENST00000463988 C19orf44Q9H6X5 657 aa21.62■■□□□ 1.05
SNRNP40-203ENST00000463988 C14orf37Q86TY3 774 aa21.61■■□□□ 1.05
SNRNP40-203ENST00000463988 NRXN3Q9Y4C0 1643 aa21.61■■□□□ 1.05
SNRNP40-203ENST00000463988 PTPRUQ92729 1446 aa21.61■■□□□ 1.05
SNRNP40-203ENST00000463988 CADPS2Q86UW7 1296 aa21.6■■□□□ 1.05
SNRNP40-203ENST00000463988 SLC4A1APQ9BWU0 796 aaKnown RBP21.59■■□□□ 1.05
SNRNP40-203ENST00000463988 NEXMIFQ5QGS0 1516 aa21.59■■□□□ 1.05
SNRNP40-203ENST00000463988 KIF1BO60333 1816 aa21.58■■□□□ 1.05
SNRNP40-203ENST00000463988 ATF3P18847 181 aa21.57■■□□□ 1.04
SNRNP40-203ENST00000463988 XRN1Q8IZH2 1706 aaKnown RBP21.56■■□□□ 1.04
SNRNP40-203ENST00000463988 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.55■■□□□ 1.04
SNRNP40-203ENST00000463988 METP08581 1390 aa21.55■■□□□ 1.04
SNRNP40-203ENST00000463988 DCCP43146 1447 aa21.55■■□□□ 1.04
SNRNP40-203ENST00000463988 RPGRIP1LQ68CZ1 1315 aa21.55■■□□□ 1.04
SNRNP40-203ENST00000463988 VGFO15240 615 aaPredicted RBP21.54■■□□□ 1.04
SNRNP40-203ENST00000463988 PHLPP1O60346 1717 aa21.52■■□□□ 1.03
SNRNP40-203ENST00000463988 JCADQ9P266 1359 aa21.51■■□□□ 1.03
SNRNP40-203ENST00000463988 RGS17Q9UGC6 210 aaPredicted RBP21.51■■□□□ 1.03
SNRNP40-203ENST00000463988 ACIN1Q9UKV3 1341 aaKnown RBP21.5■■□□□ 1.03
SNRNP40-203ENST00000463988 COL16A1Q07092 1604 aaPredicted RBP21.47■■□□□ 1.03
SNRNP40-203ENST00000463988 AHDC1Q5TGY3 1603 aaPredicted RBP21.47■■□□□ 1.03
SNRNP40-203ENST00000463988 BRINP3Q76B58 766 aa21.45■■□□□ 1.02
SNRNP40-203ENST00000463988 MPHOSPH9Q99550 1183 aa21.45■■□□□ 1.02
SNRNP40-203ENST00000463988 ADGRL3Q9HAR2 1447 aa21.45■■□□□ 1.02
SNRNP40-203ENST00000463988 FOXD1Q16676 465 aa21.44■■□□□ 1.02
SNRNP40-203ENST00000463988 CCDC144AA2RUR9 1427 aa21.44■■□□□ 1.02
SNRNP40-203ENST00000463988 SPATA31A6Q5VVP1 1343 aa21.43■■□□□ 1.02
SNRNP40-203ENST00000463988 MST1RQ04912 1400 aa21.43■■□□□ 1.02
SNRNP40-203ENST00000463988 PTCH1Q13635 1447 aa21.43■■□□□ 1.02
SNRNP40-203ENST00000463988 PRAG1Q86YV5 1406 aa21.43■■□□□ 1.02
SNRNP40-203ENST00000463988 SETD1AO15047 1707 aaKnown RBP21.42■■□□□ 1.02
SNRNP40-203ENST00000463988 PPLO60437 1756 aa21.42■■□□□ 1.02
SNRNP40-203ENST00000463988 ASXL1Q8IXJ9 1541 aa21.39■■□□□ 1.02
SNRNP40-203ENST00000463988 SPATA31E1Q6ZUB1 1445 aa21.39■■□□□ 1.02
SNRNP40-203ENST00000463988 ROBO2Q9HCK4 1378 aa21.38■■□□□ 1.01
SNRNP40-203ENST00000463988 POTEAQ6S8J7 498 aa21.38■■□□□ 1.01
SNRNP40-203ENST00000463988 SETD5Q9C0A6 1442 aa21.38■■□□□ 1.01
SNRNP40-203ENST00000463988 ANKRD30BQ9BXX2 1392 aa21.37■■□□□ 1.01
SNRNP40-203ENST00000463988 NALCNQ8IZF0 1738 aa21.37■■□□□ 1.01
SNRNP40-203ENST00000463988 SHPRHQ149N8 1683 aa21.37■■□□□ 1.01
SNRNP40-203ENST00000463988 ADGRF5Q8IZF2 1346 aa21.34■■□□□ 1.01
SNRNP40-203ENST00000463988 RGL3Q3MIN7 710 aa21.34■■□□□ 1.01
SNRNP40-203ENST00000463988 NHSL1Q5SYE7 1610 aa21.33■■□□□ 1.01
SNRNP40-203ENST00000463988 LRRC59Q96AG4 307 aaKnown RBP21.33■■□□□ 1.01
SNRNP40-203ENST00000463988 LRP6O75581 1613 aa21.33■■□□□ 1
SNRNP40-203ENST00000463988 C1orf167Q5SNV9 1468 aa21.32■■□□□ 1
SNRNP40-203ENST00000463988 IFT172Q9UG01 1749 aa21.3■■□□□ 1
SNRNP40-203ENST00000463988 MEX3CQ5U5Q3 659 aaKnown RBP21.3■■□□□ 1
SNRNP40-203ENST00000463988 ZNF772Q68DY9 489 aaPredicted RBP21.28■■□□□ 1
SNRNP40-203ENST00000463988 TECPR2O15040 1411 aa21.28■■□□□ 1
SNRNP40-203ENST00000463988 PIK3C2GO75747 1445 aa21.28■■□□□ 1
SNRNP40-203ENST00000463988 LRPPRCP42704 1394 aaKnown RBP21.27■■□□□ 1
SNRNP40-203ENST00000463988 RAB3GAP2Q9H2M9 1393 aa21.27■■□□□ 1
SNRNP40-203ENST00000463988 LAMC1P11047 1609 aa21.27■■□□□ 1
SNRNP40-203ENST00000463988 ABCC11Q96J66 1382 aa21.26■□□□□ 0.99
SNRNP40-203ENST00000463988 DDX17Q92841 729 aaKnown RBP21.25■□□□□ 0.99
SNRNP40-203ENST00000463988 ORAI2Q96SN7 254 aa21.24■□□□□ 0.99
SNRNP40-203ENST00000463988 PNPLA6Q8IY17 1366 aa21.23■□□□□ 0.99
SNRNP40-203ENST00000463988 CDC42BPGQ6DT37 1551 aa21.23■□□□□ 0.99
SNRNP40-203ENST00000463988 NUTM2BA6NNL0 878 aaPredicted RBP21.23■□□□□ 0.99
SNRNP40-203ENST00000463988 NUTM2EB1AL46 878 aaPredicted RBP21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms