RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 MYT1Q01538 1121 aa10.36□□□□□ -0.75
VPS29-202ENST00000447578 PLCB2Q00722 1185 aa10.35□□□□□ -0.75
VPS29-202ENST00000447578 FAM161AQ3B820 660 aa10.35□□□□□ -0.75
VPS29-202ENST00000447578 PKDCCQ504Y2 493 aa10.35□□□□□ -0.75
VPS29-202ENST00000447578 P3H3Q8IVL6 736 aa10.35□□□□□ -0.75
VPS29-202ENST00000447578 DGAT1O75907 488 aa10.33□□□□□ -0.76
VPS29-202ENST00000447578 SLF2Q8IX21 1173 aa10.33□□□□□ -0.76
VPS29-202ENST00000447578 COPS2P61201 443 aa10.31□□□□□ -0.76
VPS29-202ENST00000447578 NKX2-3Q8TAU0 364 aa10.31□□□□□ -0.76
VPS29-202ENST00000447578 ADGRG1Q9Y653 693 aa10.31□□□□□ -0.76
VPS29-202ENST00000447578 GGCXP38435 758 aa10.3□□□□□ -0.76
VPS29-202ENST00000447578 RBM46Q8TBY0 533 aaKnown RBP10.28□□□□□ -0.76
VPS29-202ENST00000447578 FCHSD2O94868 740 aa10.27□□□□□ -0.77
VPS29-202ENST00000447578 DNAJB2P25686 324 aa10.27□□□□□ -0.77
VPS29-202ENST00000447578 RBM26Q5T8P6 1007 aaKnown RBP10.27□□□□□ -0.77
VPS29-202ENST00000447578 RCCD1A6NED2 376 aa10.26□□□□□ -0.77
VPS29-202ENST00000447578 SLC4A3P48751 1232 aa10.26□□□□□ -0.77
VPS29-202ENST00000447578 TRIM67Q6ZTA4 783 aa10.26□□□□□ -0.77
VPS29-202ENST00000447578 NECTIN2Q92692 538 aa10.26□□□□□ -0.77
VPS29-202ENST00000447578 TMEM134Q9H6X4 195 aa10.26□□□□□ -0.77
VPS29-202ENST00000447578 INSM1Q01101 510 aaPredicted RBP10.25□□□□□ -0.77
VPS29-202ENST00000447578 TESPA1A2RU30 521 aaPredicted RBP10.24□□□□□ -0.77
VPS29-202ENST00000447578 TMUB1Q9BVT8 246 aa10.24□□□□□ -0.77
VPS29-202ENST00000447578 WFS1O76024 890 aa10.23□□□□□ -0.77
VPS29-202ENST00000447578 PCDHB3Q9Y5E6 796 aa10.23□□□□□ -0.77
VPS29-202ENST00000447578 ZPR1O75312 459 aa10.22□□□□□ -0.77
VPS29-202ENST00000447578 HAP1P54257 671 aaPredicted RBP10.22□□□□□ -0.77
VPS29-202ENST00000447578 BLOC1S3Q6QNY0 202 aa10.22□□□□□ -0.77
VPS29-202ENST00000447578 FECHP22830 423 aa10.21□□□□□ -0.77
VPS29-202ENST00000447578 PRR20EP86478 221 aa10.2□□□□□ -0.78
VPS29-202ENST00000447578 PRR20CP86479 221 aa10.2□□□□□ -0.78
VPS29-202ENST00000447578 PRR20DP86480 221 aa10.2□□□□□ -0.78
VPS29-202ENST00000447578 PRR20BP86481 221 aa10.2□□□□□ -0.78
VPS29-202ENST00000447578 PRR20AP86496 221 aa10.2□□□□□ -0.78
VPS29-202ENST00000447578 SLC10A3P09131 477 aa10.19□□□□□ -0.78
VPS29-202ENST00000447578 PXYLP1Q8TE99 480 aa10.19□□□□□ -0.78
VPS29-202ENST00000447578 PRR14Q9BWN1 585 aa10.19□□□□□ -0.78
VPS29-202ENST00000447578 KDM2AQ9Y2K7 1162 aa10.19□□□□□ -0.78
VPS29-202ENST00000447578 WIPF1O43516 503 aa10.18□□□□□ -0.78
VPS29-202ENST00000447578 CFHP08603 1231 aa10.18□□□□□ -0.78
VPS29-202ENST00000447578 HIC1Q14526 733 aa10.18□□□□□ -0.78
VPS29-202ENST00000447578 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.17□□□□□ -0.78
VPS29-202ENST00000447578 TLL1O43897 1013 aa10.17□□□□□ -0.78
VPS29-202ENST00000447578 SLC19A1P41440 591 aa10.17□□□□□ -0.78
VPS29-202ENST00000447578 FAM187AA6NFU0 413 aa10.16□□□□□ -0.78
VPS29-202ENST00000447578 GPR37O15354 613 aa10.16□□□□□ -0.78
VPS29-202ENST00000447578 OATP04181 439 aa10.16□□□□□ -0.78
VPS29-202ENST00000447578 SMYD5Q6GMV2 418 aa10.16□□□□□ -0.78
VPS29-202ENST00000447578 METTL3Q86U44 580 aaKnown RBP10.16□□□□□ -0.78
VPS29-202ENST00000447578 ACTN4O43707 911 aaKnown RBP10.15□□□□□ -0.78
VPS29-202ENST00000447578 KMT5BQ4FZB7 885 aa10.15□□□□□ -0.78
VPS29-202ENST00000447578 GNPATO15228 680 aa10.14□□□□□ -0.79
VPS29-202ENST00000447578 ZNF598Q86UK7 904 aaKnown RBP10.13□□□□□ -0.79
VPS29-202ENST00000447578 NLRP7Q8WX94 980 aa10.13□□□□□ -0.79
VPS29-202ENST00000447578 AAASQ9NRG9 546 aa10.13□□□□□ -0.79
VPS29-202ENST00000447578 RNF223E7ERA6 249 aa10.12□□□□□ -0.79
VPS29-202ENST00000447578 SPRYD7Q5W111 196 aa10.12□□□□□ -0.79
VPS29-202ENST00000447578 PPEF1O14829 653 aaPredicted RBP10.11□□□□□ -0.79
VPS29-202ENST00000447578 ST8SIA5O15466 376 aa10.11□□□□□ -0.79
VPS29-202ENST00000447578 PUS10Q3MIT2 529 aaKnown RBP10.1□□□□□ -0.79
VPS29-202ENST00000447578 S1PR4O95977 384 aa10.09□□□□□ -0.79
VPS29-202ENST00000447578 NFX1Q12986 1120 aaKnown RBP10.09□□□□□ -0.79
VPS29-202ENST00000447578 EMID1Q96A84 441 aaPredicted RBP10.09□□□□□ -0.79
VPS29-202ENST00000447578 PHOX2BQ99453 314 aa10.08□□□□□ -0.8
VPS29-202ENST00000447578 NR1I2O75469 434 aa10.06□□□□□ -0.8
VPS29-202ENST00000447578 GPIHBP1Q8IV16 184 aa10.06□□□□□ -0.8
VPS29-202ENST00000447578 SCUBE3Q8IX30 993 aa10.06□□□□□ -0.8
VPS29-202ENST00000447578 DAXXQ9UER7 740 aaPredicted RBP10.06□□□□□ -0.8
VPS29-202ENST00000447578 DDX11L8A8MPP1 907 aa10.05□□□□□ -0.8
VPS29-202ENST00000447578 ZNF697Q5TEC3 545 aa10.05□□□□□ -0.8
VPS29-202ENST00000447578 RDH13Q8NBN7 331 aa10.05□□□□□ -0.8
VPS29-202ENST00000447578 GDF9O60383 454 aa10.04□□□□□ -0.8
VPS29-202ENST00000447578 ADH1BP00325 375 aa10.04□□□□□ -0.8
VPS29-202ENST00000447578 RSPH4AQ5TD94 716 aa10.04□□□□□ -0.8
VPS29-202ENST00000447578 FAM181BA6NEQ2 426 aa10.03□□□□□ -0.8
VPS29-202ENST00000447578 TNFRSF10AO00220 468 aa10.03□□□□□ -0.8
VPS29-202ENST00000447578 LIAT1Q6ZQX7 453 aa10.02□□□□□ -0.81
VPS29-202ENST00000447578 ANKLE1Q8NAG6 615 aa10.02□□□□□ -0.81
VPS29-202ENST00000447578 C11orf95C9JLR9 678 aaPredicted RBP10.01□□□□□ -0.81
VPS29-202ENST00000447578 FUT2Q10981 343 aa10.01□□□□□ -0.81
VPS29-202ENST00000447578 SLC6A16Q9GZN6 736 aa10.01□□□□□ -0.81
VPS29-202ENST00000447578 PLA2G2CQ5R387 149 aa10□□□□□ -0.81
VPS29-202ENST00000447578 CRIPAKQ8N1N5 446 aa10□□□□□ -0.81
VPS29-202ENST00000447578 SPSB2Q99619 263 aa10□□□□□ -0.81
VPS29-202ENST00000447578 SUZ12Q15022 739 aaKnown RBP9.99□□□□□ -0.81
VPS29-202ENST00000447578 MORN1Q5T089 497 aa9.99□□□□□ -0.81
VPS29-202ENST00000447578 VSIG10Q8N0Z9 540 aa9.98□□□□□ -0.81
VPS29-202ENST00000447578 GMPR2Q9P2T1 348 aaKnown RBP9.98□□□□□ -0.81
VPS29-202ENST00000447578 GCGRP47871 477 aa9.97□□□□□ -0.81
VPS29-202ENST00000447578 ATP6V1AP38606 617 aa9.96□□□□□ -0.82
VPS29-202ENST00000447578 DACH1Q9UI36 760 aa9.96□□□□□ -0.82
VPS29-202ENST00000447578 SLC27A5Q9Y2P5 690 aa9.96□□□□□ -0.82
VPS29-202ENST00000447578 THAP11Q96EK4 314 aa9.95□□□□□ -0.82
VPS29-202ENST00000447578 SULF1Q8IWU6 871 aa9.94□□□□□ -0.82
VPS29-202ENST00000447578 FAM160A2Q8N612 972 aaPredicted RBP9.93□□□□□ -0.82
VPS29-202ENST00000447578 AXIN1O15169 862 aa9.92□□□□□ -0.82
VPS29-202ENST00000447578 MAP2K5Q13163 448 aa9.92□□□□□ -0.82
VPS29-202ENST00000447578 IRF6O14896 467 aa9.91□□□□□ -0.82
VPS29-202ENST00000447578 TERTO14746 1132 aaKnown RBP9.9□□□□□ -0.82
VPS29-202ENST00000447578 SLC24A1O60721 1099 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms