RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 LMOD1P29536 600 aaPredicted RBP7.85□□□□□ -1.15
VPS13A-207ENST00000419472 RSPH4AQ5TD94 716 aa7.85□□□□□ -1.15
VPS13A-207ENST00000419472 SPIRE2Q8WWL2 714 aa7.85□□□□□ -1.15
VPS13A-207ENST00000419472 PXYLP1Q8TE99 480 aa7.84□□□□□ -1.15
VPS13A-207ENST00000419472 VAC14Q08AM6 782 aa7.84□□□□□ -1.15
VPS13A-207ENST00000419472 GJD4Q96KN9 370 aaPredicted RBP7.83□□□□□ -1.16
VPS13A-207ENST00000419472 UCN2Q96RP3 112 aa7.83□□□□□ -1.16
VPS13A-207ENST00000419472 USP17L8P0C7I0 530 aa7.83□□□□□ -1.16
VPS13A-207ENST00000419472 RTL5Q5HYW3 569 aaPredicted RBP7.83□□□□□ -1.16
VPS13A-207ENST00000419472 TRIM35Q9UPQ4 493 aa7.83□□□□□ -1.16
VPS13A-207ENST00000419472 PCDHB15Q9Y5E8 787 aa7.83□□□□□ -1.16
VPS13A-207ENST00000419472 ZNF710Q8N1W2 664 aa7.82□□□□□ -1.16
VPS13A-207ENST00000419472 PADI6Q6TGC4 694 aa7.82□□□□□ -1.16
VPS13A-207ENST00000419472 MRRFQ96E11 262 aaKnown RBP7.82□□□□□ -1.16
VPS13A-207ENST00000419472 TMEM121BQ9BXQ6 578 aaPredicted RBP7.82□□□□□ -1.16
VPS13A-207ENST00000419472 HMX1Q9NP08 348 aaPredicted RBP7.82□□□□□ -1.16
VPS13A-207ENST00000419472 TFIP11Q9UBB9 837 aaKnown RBP7.82□□□□□ -1.16
VPS13A-207ENST00000419472 RBM47A0AV96 593 aaKnown RBP7.81□□□□□ -1.16
VPS13A-207ENST00000419472 MOXD2PA6NHM9 499 aa7.81□□□□□ -1.16
VPS13A-207ENST00000419472 TXNDC2Q86VQ3 553 aa7.81□□□□□ -1.16
VPS13A-207ENST00000419472 ADGRG1Q9Y653 693 aa7.81□□□□□ -1.16
VPS13A-207ENST00000419472 CD44P16070 742 aaKnown RBP7.81□□□□□ -1.16
VPS13A-207ENST00000419472 EIF5BO60841 1220 aaKnown RBP7.8□□□□□ -1.16
VPS13A-207ENST00000419472 NDUFV2P19404 249 aa7.8□□□□□ -1.16
VPS13A-207ENST00000419472 RSBN1LQ6PCB5 846 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-207ENST00000419472 CHMP4AQ9BY43 222 aa7.8□□□□□ -1.16
VPS13A-207ENST00000419472 BMP2KQ9NSY1 1161 aaPredicted RBP7.8□□□□□ -1.16
VPS13A-207ENST00000419472 BOLA1Q9Y3E2 137 aa7.8□□□□□ -1.16
VPS13A-207ENST00000419472 FXR2P51116 673 aaKnown RBP eCLIP7.79□□□□□ -1.163e-8■■■□□ 16
VPS13A-207ENST00000419472 CABLES1Q8TDN4 633 aa7.79□□□□□ -1.16
VPS13A-207ENST00000419472 PRM3Q9NNZ6 103 aa7.79□□□□□ -1.16
VPS13A-207ENST00000419472 OATP04181 439 aa7.79□□□□□ -1.16
VPS13A-207ENST00000419472 NOM1Q5C9Z4 860 aaKnown RBP7.79□□□□□ -1.16
VPS13A-207ENST00000419472 PCDHGA10Q9Y5H3 936 aa7.79□□□□□ -1.16
VPS13A-207ENST00000419472 SPTLC1O15269 473 aa7.78□□□□□ -1.16
VPS13A-207ENST00000419472 LILRB3O75022 631 aa7.78□□□□□ -1.16
VPS13A-207ENST00000419472 DIXDC1Q155Q3 683 aa7.78□□□□□ -1.16
VPS13A-207ENST00000419472 NDUFB9Q9Y6M9 179 aa7.77□□□□□ -1.16
VPS13A-207ENST00000419472 UNC13AQ9UPW8 1703 aa7.77□□□□□ -1.17
VPS13A-207ENST00000419472 ALG2Q9H553 416 aa7.77□□□□□ -1.17
VPS13A-207ENST00000419472 GNEQ9Y223 722 aaKnown RBP7.77□□□□□ -1.17
VPS13A-207ENST00000419472 PRR7Q8TB68 274 aa7.76□□□□□ -1.17
VPS13A-207ENST00000419472 SOCS7O14512 581 aa7.76□□□□□ -1.17
VPS13A-207ENST00000419472 TIE1P35590 1138 aa7.76□□□□□ -1.17
VPS13A-207ENST00000419472 DNAJC14Q6Y2X3 702 aaPredicted RBP7.76□□□□□ -1.17
VPS13A-207ENST00000419472 TRIM34Q9BYJ4 488 aa7.76□□□□□ -1.17
VPS13A-207ENST00000419472 PHF14O94880 888 aa7.76□□□□□ -1.17
VPS13A-207ENST00000419472 ATG7O95352 703 aa7.76□□□□□ -1.17
VPS13A-207ENST00000419472 ANO8Q9HCE9 1232 aaPredicted RBP7.76□□□□□ -1.17
VPS13A-207ENST00000419472 NUTM2BA6NNL0 878 aaPredicted RBP7.75□□□□□ -1.17
VPS13A-207ENST00000419472 NUTM2EB1AL46 878 aaPredicted RBP7.75□□□□□ -1.17
VPS13A-207ENST00000419472 NUTM2DQ5VT03 806 aaPredicted RBP7.75□□□□□ -1.17
VPS13A-207ENST00000419472 PHLDB3Q6NSJ2 640 aa7.75□□□□□ -1.17
VPS13A-207ENST00000419472 NUTM2AQ8IVF1 878 aaPredicted RBP7.75□□□□□ -1.17
VPS13A-207ENST00000419472 MAFBQ9Y5Q3 323 aaPredicted RBP7.75□□□□□ -1.17
VPS13A-207ENST00000419472 SLAIN1Q8ND83 568 aa7.74□□□□□ -1.17
VPS13A-207ENST00000419472 EPS8L1Q8TE68 723 aa7.74□□□□□ -1.17
VPS13A-207ENST00000419472 STK32AQ8WU08 396 aa7.74□□□□□ -1.17
VPS13A-207ENST00000419472 ZNF16P17020 682 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-207ENST00000419472 TBC1D9Q6ZT07 1266 aa7.73□□□□□ -1.17
VPS13A-207ENST00000419472 CD46P15529 392 aa7.73□□□□□ -1.17
VPS13A-207ENST00000419472 CTDSPL2Q05D32 466 aa7.73□□□□□ -1.17
VPS13A-207ENST00000419472 WASHC4Q2M389 1173 aa7.73□□□□□ -1.17
VPS13A-207ENST00000419472 TUSC1Q2TAM9 212 aa7.72□□□□□ -1.17
VPS13A-207ENST00000419472 EPAS1Q99814 870 aa7.72□□□□□ -1.17
VPS13A-207ENST00000419472 ZMIZ1Q9ULJ6 1067 aa7.72□□□□□ -1.17
VPS13A-207ENST00000419472 TMEM164Q5U3C3 297 aa7.72□□□□□ -1.17
VPS13A-207ENST00000419472 NUTM1Q86Y26 1132 aa7.71□□□□□ -1.17
VPS13A-207ENST00000419472 PTCD2Q8WV60 388 aaKnown RBP7.71□□□□□ -1.17
VPS13A-207ENST00000419472 CCDC125Q86Z20 511 aa7.71□□□□□ -1.18
VPS13A-207ENST00000419472 LRRN4Q8WUT4 740 aa7.71□□□□□ -1.18
VPS13A-207ENST00000419472 IRX5P78411 483 aaPredicted RBP7.7□□□□□ -1.18
VPS13A-207ENST00000419472 DDX11L8A8MPP1 907 aa7.7□□□□□ -1.18
VPS13A-207ENST00000419472 SCNN1AP37088 669 aa7.7□□□□□ -1.18
VPS13A-207ENST00000419472 GIPC2Q8TF65 315 aa7.69□□□□□ -1.18
VPS13A-207ENST00000419472 BCL2L13Q9BXK5 485 aa7.69□□□□□ -1.18
VPS13A-207ENST00000419472 SMARCA5O60264 1052 aaPredicted RBP7.69□□□□□ -1.18
VPS13A-207ENST00000419472 SLAIN2Q9P270 581 aa7.69□□□□□ -1.18
VPS13A-207ENST00000419472 BICRAQ9NZM4 1560 aa7.68□□□□□ -1.18
VPS13A-207ENST00000419472 G3V3G9 751 aa7.68□□□□□ -1.18
VPS13A-207ENST00000419472 TCF3P15923 654 aa7.68□□□□□ -1.18
VPS13A-207ENST00000419472 PIP4P2Q8N4L2 257 aa7.68□□□□□ -1.18
VPS13A-207ENST00000419472 TTC13Q8NBP0 860 aa7.68□□□□□ -1.18
VPS13A-207ENST00000419472 RCCD1A6NED2 376 aa7.68□□□□□ -1.18
VPS13A-207ENST00000419472 PPM1GO15355 546 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-207ENST00000419472 CCER1Q8TC90 406 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-207ENST00000419472 SERPINB4P48594 390 aa7.67□□□□□ -1.18
VPS13A-207ENST00000419472 TYW1BQ6NUM6 668 aa7.67□□□□□ -1.18
VPS13A-207ENST00000419472 TSC1Q92574 1164 aa7.67□□□□□ -1.18
VPS13A-207ENST00000419472 HLA-CQ95604 372 aa7.67□□□□□ -1.18
VPS13A-207ENST00000419472 GUCA2AQ02747 115 aa7.67□□□□□ -1.18
VPS13A-207ENST00000419472 KANK4Q5T7N3 995 aaPredicted RBP7.67□□□□□ -1.18
VPS13A-207ENST00000419472 L3MBTL3Q96JM7 780 aaPredicted RBP7.67□□□□□ -1.18
VPS13A-207ENST00000419472 C6orf132Q5T0Z8 1188 aa7.66□□□□□ -1.18
VPS13A-207ENST00000419472 TAGLNQ01995 201 aaKnown RBP7.66□□□□□ -1.18
VPS13A-207ENST00000419472 C3orf80F5H4A9 247 aa7.65□□□□□ -1.18
VPS13A-207ENST00000419472 OCEL1Q9H607 264 aa7.65□□□□□ -1.18
VPS13A-207ENST00000419472 FAM198AQ9UFP1 575 aa7.65□□□□□ -1.18
VPS13A-207ENST00000419472 PIK3CDO00329 1044 aa7.65□□□□□ -1.18
VPS13A-207ENST00000419472 RBM46Q8TBY0 533 aaKnown RBP7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms