RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 HRO43593 1189 aa9.57□□□□□ -0.88
VPS54-204ENST00000416400 DAXXQ9UER7 740 aaPredicted RBP9.57□□□□□ -0.88
VPS54-204ENST00000416400 SULF1Q8IWU6 871 aa9.56□□□□□ -0.88
VPS54-204ENST00000416400 PARP9Q8IXQ6 854 aa9.56□□□□□ -0.88
VPS54-204ENST00000416400 NLRP7Q8WX94 980 aa9.56□□□□□ -0.88
VPS54-204ENST00000416400 ZFRQ96KR1 1074 aaKnown RBP9.56□□□□□ -0.88
VPS54-204ENST00000416400 TMEM134Q9H6X4 195 aa9.56□□□□□ -0.88
VPS54-204ENST00000416400 ANKK1Q8NFD2 765 aa9.55□□□□□ -0.88
VPS54-204ENST00000416400 RNF40O75150 1001 aa9.54□□□□□ -0.88
VPS54-204ENST00000416400 SWT1Q5T5J6 900 aaKnown RBP9.54□□□□□ -0.88
VPS54-204ENST00000416400 GIGYF2Q6Y7W6 1299 aaKnown RBP9.54□□□□□ -0.88
VPS54-204ENST00000416400 SLF2Q8IX21 1173 aa9.54□□□□□ -0.88
VPS54-204ENST00000416400 LRCH3Q96II8 777 aa9.54□□□□□ -0.88
VPS54-204ENST00000416400 KDM4CQ9H3R0 1056 aa9.54□□□□□ -0.88
VPS54-204ENST00000416400 GPBP1L1Q9HC44 474 aaPredicted RBP9.54□□□□□ -0.88
VPS54-204ENST00000416400 DDX11L8A8MPP1 907 aa9.53□□□□□ -0.88
VPS54-204ENST00000416400 SAMD7Q7Z3H4 446 aa9.53□□□□□ -0.88
VPS54-204ENST00000416400 NECTIN2Q92692 538 aa9.53□□□□□ -0.88
VPS54-204ENST00000416400 WNT2BQ93097 391 aa9.53□□□□□ -0.88
VPS54-204ENST00000416400 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.53□□□□□ -0.88
VPS54-204ENST00000416400 SSTR3P32745 418 aaPredicted RBP9.52□□□□□ -0.89
VPS54-204ENST00000416400 RDH13Q8NBN7 331 aa9.52□□□□□ -0.89
VPS54-204ENST00000416400 FAM217BQ9NTX9 383 aaPredicted RBP9.5□□□□□ -0.89
VPS54-204ENST00000416400 SPNS2Q8IVW8 549 aa9.49□□□□□ -0.89
VPS54-204ENST00000416400 DDRGK1Q96HY6 314 aa9.49□□□□□ -0.89
VPS54-204ENST00000416400 TMUB1Q9BVT8 246 aa9.49□□□□□ -0.89
VPS54-204ENST00000416400 REPIN1Q9BWE0 567 aaKnown RBP9.49□□□□□ -0.89
VPS54-204ENST00000416400 TIMELESSQ9UNS1 1208 aa9.49□□□□□ -0.89
VPS54-204ENST00000416400 ERICH6Q7L0X2 663 aa9.48□□□□□ -0.89
VPS54-204ENST00000416400 PPP4CP60510 307 aa9.47□□□□□ -0.89
VPS54-204ENST00000416400 KCTD12Q96CX2 325 aaKnown RBP9.47□□□□□ -0.89
VPS54-204ENST00000416400 MYT1LQ9UL68 1186 aa9.47□□□□□ -0.89
VPS54-204ENST00000416400 SOWAHBA6NEL2 793 aa9.46□□□□□ -0.9
VPS54-204ENST00000416400 BEGAINQ9BUH8 593 aa9.46□□□□□ -0.9
VPS54-204ENST00000416400 MS4A1P11836 297 aa9.45□□□□□ -0.9
VPS54-204ENST00000416400 BCAMP50895 628 aa9.45□□□□□ -0.9
VPS54-204ENST00000416400 NUTM1Q86Y26 1132 aa9.45□□□□□ -0.9
VPS54-204ENST00000416400 IL27Q8NEV9 243 aa9.45□□□□□ -0.9
VPS54-204ENST00000416400 HPS5Q9UPZ3 1129 aa9.45□□□□□ -0.9
VPS54-204ENST00000416400 DIXDC1Q155Q3 683 aa9.44□□□□□ -0.9
VPS54-204ENST00000416400 KMT5BQ4FZB7 885 aa9.44□□□□□ -0.9
VPS54-204ENST00000416400 PRR14Q9BWN1 585 aa9.44□□□□□ -0.9
VPS54-204ENST00000416400 TSR3Q9UJK0 312 aaKnown RBP9.44□□□□□ -0.9
VPS54-204ENST00000416400 CD46P15529 392 aa9.43□□□□□ -0.9
VPS54-204ENST00000416400 FAM117AQ9C073 453 aa9.43□□□□□ -0.9
VPS54-204ENST00000416400 RSPH6AQ9H0K4 717 aa9.42□□□□□ -0.9
VPS54-204ENST00000416400 ATP1B4Q9UN42 357 aaPredicted RBP9.42□□□□□ -0.9
VPS54-204ENST00000416400 CFHP08603 1231 aa9.41□□□□□ -0.9
VPS54-204ENST00000416400 THSD4Q6ZMP0 1018 aa9.41□□□□□ -0.9
VPS54-204ENST00000416400 SLC10A3P09131 477 aa9.4□□□□□ -0.9
VPS54-204ENST00000416400 GRIPAP1Q4V328 841 aa9.4□□□□□ -0.9
VPS54-204ENST00000416400 GCGRP47871 477 aa9.39□□□□□ -0.91
VPS54-204ENST00000416400 PTPN5P54829 565 aa9.39□□□□□ -0.91
VPS54-204ENST00000416400 KDM4AO75164 1064 aa9.38□□□□□ -0.91
VPS54-204ENST00000416400 USP46P62068 366 aa9.38□□□□□ -0.91
VPS54-204ENST00000416400 NYAP1Q6ZVC0 841 aa9.38□□□□□ -0.91
VPS54-204ENST00000416400 RNF166Q96A37 237 aaPredicted RBP9.38□□□□□ -0.91
VPS54-204ENST00000416400 C14orf37Q86TY3 774 aa9.36□□□□□ -0.91
VPS54-204ENST00000416400 TBC1D2Q9BYX2 928 aa9.36□□□□□ -0.91
VPS54-204ENST00000416400 WBP1LQ9NX94 342 aa9.36□□□□□ -0.91
VPS54-204ENST00000416400 SPIRE2Q8WWL2 714 aa9.35□□□□□ -0.91
VPS54-204ENST00000416400 PLEKHG3A1L390 1219 aa9.34□□□□□ -0.91
VPS54-204ENST00000416400 ACTN4O43707 911 aaKnown RBP9.34□□□□□ -0.91
VPS54-204ENST00000416400 PCMTD1Q96MG8 357 aaPredicted RBP9.34□□□□□ -0.91
VPS54-204ENST00000416400 HCSTQ9UBK5 93 aa9.34□□□□□ -0.91
VPS54-204ENST00000416400 ATP6V1AP38606 617 aa9.33□□□□□ -0.92
VPS54-204ENST00000416400 FUT2Q10981 343 aa9.32□□□□□ -0.92
VPS54-204ENST00000416400 SH3D19Q5HYK7 790 aa9.32□□□□□ -0.92
VPS54-204ENST00000416400 PCDHB3Q9Y5E6 796 aa9.32□□□□□ -0.92
VPS54-204ENST00000416400 APLP1P51693 650 aa9.31□□□□□ -0.92
VPS54-204ENST00000416400 SKIV2LQ15477 1246 aaKnown RBP9.31□□□□□ -0.92
VPS54-204ENST00000416400 GOPCQ9HD26 462 aa9.31□□□□□ -0.92
VPS54-204ENST00000416400 POLR3EQ9NVU0 708 aa9.31□□□□□ -0.92
VPS54-204ENST00000416400 HOXA2O43364 376 aa9.3□□□□□ -0.92
VPS54-204ENST00000416400 MYSM1Q5VVJ2 828 aa9.3□□□□□ -0.92
VPS54-204ENST00000416400 RIC3Q7Z5B4 369 aa9.3□□□□□ -0.92
VPS54-204ENST00000416400 MOXD2PA6NHM9 499 aa9.29□□□□□ -0.92
VPS54-204ENST00000416400 NR1I2O75469 434 aa9.29□□□□□ -0.92
VPS54-204ENST00000416400 CLK2P49760 499 aaKnown RBP9.29□□□□□ -0.92
VPS54-204ENST00000416400 FDX1P10109 184 aa9.28□□□□□ -0.92
VPS54-204ENST00000416400 NDUFV2P19404 249 aa9.27□□□□□ -0.93
VPS54-204ENST00000416400 PUS10Q3MIT2 529 aaKnown RBP9.27□□□□□ -0.93
VPS54-204ENST00000416400 RSBN1LQ6PCB5 846 aaPredicted RBP9.27□□□□□ -0.93
VPS54-204ENST00000416400 SPTLC1O15269 473 aa9.26□□□□□ -0.93
VPS54-204ENST00000416400 GJA5P36382 358 aa9.26□□□□□ -0.93
VPS54-204ENST00000416400 CSPP1Q1MSJ5 1256 aa9.26□□□□□ -0.93
VPS54-204ENST00000416400 Q3C1V9 767 aa9.26□□□□□ -0.93
VPS54-204ENST00000416400 NUTM2BA6NNL0 878 aaPredicted RBP9.25□□□□□ -0.93
VPS54-204ENST00000416400 NUTM2EB1AL46 878 aaPredicted RBP9.25□□□□□ -0.93
VPS54-204ENST00000416400 COPS2P61201 443 aa9.25□□□□□ -0.93
VPS54-204ENST00000416400 MORN1Q5T089 497 aa9.25□□□□□ -0.93
VPS54-204ENST00000416400 NUTM2DQ5VT03 806 aaPredicted RBP9.25□□□□□ -0.93
VPS54-204ENST00000416400 NUTM2AQ8IVF1 878 aaPredicted RBP9.25□□□□□ -0.93
VPS54-204ENST00000416400 BLOC1S3Q6QNY0 202 aa9.24□□□□□ -0.93
VPS54-204ENST00000416400 C6orf229H3BNL8 230 aa9.23□□□□□ -0.93
VPS54-204ENST00000416400 SLC27A5Q9Y2P5 690 aa9.23□□□□□ -0.93
VPS54-204ENST00000416400 FMNL1O95466 1100 aaPredicted RBP9.22□□□□□ -0.93
VPS54-204ENST00000416400 GUCA2AQ02747 115 aa9.22□□□□□ -0.93
VPS54-204ENST00000416400 TUSC1Q2TAM9 212 aa9.22□□□□□ -0.93
VPS54-204ENST00000416400 SCUBE3Q8IX30 993 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms