RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 RBM33Q96EV2 1170 aaKnown RBP13.85□□□□□ -0.19
PTPN4-201ENST00000263708 ZRSR2Q15696 482 aaKnown RBP13.85□□□□□ -0.19
PTPN4-201ENST00000263708 ACBD3Q9H3P7 528 aa13.85□□□□□ -0.19
PTPN4-201ENST00000263708 H0YHG0 523 aa13.85□□□□□ -0.19
PTPN4-201ENST00000263708 MYO6Q9UM54 1294 aa13.84□□□□□ -0.19
PTPN4-201ENST00000263708 NEXNQ0ZGT2 675 aa13.84□□□□□ -0.19
PTPN4-201ENST00000263708 FOXD1Q16676 465 aa13.84□□□□□ -0.19
PTPN4-201ENST00000263708 CCDC97Q96F63 343 aaPredicted RBP13.84□□□□□ -0.19
PTPN4-201ENST00000263708 HSP90B2PQ58FF3 399 aa13.83□□□□□ -0.2
PTPN4-201ENST00000263708 NEFHP12036 1026 aa13.83□□□□□ -0.2
PTPN4-201ENST00000263708 ANKRD62A6NC57 917 aa13.83□□□□□ -0.2
PTPN4-201ENST00000263708 PDILTQ8N807 584 aa13.83□□□□□ -0.2
PTPN4-201ENST00000263708 EIF2S2P20042 333 aaKnown RBP13.82□□□□□ -0.2
PTPN4-201ENST00000263708 NECTIN2Q92692 538 aa13.82□□□□□ -0.2
PTPN4-201ENST00000263708 SLC4A3P48751 1232 aa13.82□□□□□ -0.2
PTPN4-201ENST00000263708 MNS1Q8NEH6 495 aa13.82□□□□□ -0.2
PTPN4-201ENST00000263708 IPO9Q96P70 1041 aaKnown RBP13.82□□□□□ -0.2
PTPN4-201ENST00000263708 HSPA5P11021 654 aaKnown RBP13.82□□□□□ -0.2
PTPN4-201ENST00000263708 CCDC27Q2M243 656 aa13.82□□□□□ -0.2
PTPN4-201ENST00000263708 RUFY2Q8WXA3 655 aa13.82□□□□□ -0.2
PTPN4-201ENST00000263708 FAM13BQ9NYF5 915 aa13.82□□□□□ -0.2
PTPN4-201ENST00000263708 KDM4AO75164 1064 aa13.81□□□□□ -0.2
PTPN4-201ENST00000263708 RSPH6AQ9H0K4 717 aa13.81□□□□□ -0.2
PTPN4-201ENST00000263708 SASS6Q6UVJ0 657 aa13.81□□□□□ -0.2
PTPN4-201ENST00000263708 RRP7AQ9Y3A4 280 aaKnown RBP13.81□□□□□ -0.2
PTPN4-201ENST00000263708 IFT57Q9NWB7 429 aa13.81□□□□□ -0.2
PTPN4-201ENST00000263708 ZKSCAN1P17029 563 aaPredicted RBP13.81□□□□□ -0.2
PTPN4-201ENST00000263708 IFIT2P09913 472 aaKnown RBP13.8□□□□□ -0.2
PTPN4-201ENST00000263708 SAFBQ15424 915 aaKnown RBP eCLIP13.8□□□□□ -0.2
PTPN4-201ENST00000263708 ARGLU1Q9NWB6 273 aaPredicted RBP13.8□□□□□ -0.2
PTPN4-201ENST00000263708 RALBP1Q15311 655 aa13.8□□□□□ -0.2
PTPN4-201ENST00000263708 SKOR2Q2VWA4 1001 aaPredicted RBP13.8□□□□□ -0.2
PTPN4-201ENST00000263708 PPM1FP49593 454 aaPredicted RBP13.79□□□□□ -0.2
PTPN4-201ENST00000263708 AEBP2Q6ZN18 517 aaPredicted RBP13.79□□□□□ -0.2
PTPN4-201ENST00000263708 BRMS1Q9HCU9 246 aa13.79□□□□□ -0.2
PTPN4-201ENST00000263708 ELL2O00472 640 aaPredicted RBP13.79□□□□□ -0.2
PTPN4-201ENST00000263708 SEPT7Q16181 437 aaKnown RBP13.79□□□□□ -0.2
PTPN4-201ENST00000263708 PKD2Q13563 968 aa13.78□□□□□ -0.2
PTPN4-201ENST00000263708 SYCP1Q15431 976 aa13.78□□□□□ -0.2
PTPN4-201ENST00000263708 OLFM4Q6UX06 510 aa13.78□□□□□ -0.2
PTPN4-201ENST00000263708 DHX37Q8IY37 1157 aaKnown RBP13.78□□□□□ -0.2
PTPN4-201ENST00000263708 VPS37CA5D8V6 355 aaPredicted RBP13.78□□□□□ -0.2
PTPN4-201ENST00000263708 TEFQ10587 303 aa13.78□□□□□ -0.2
PTPN4-201ENST00000263708 ENOX2Q16206 610 aaKnown RBP13.77□□□□□ -0.2
PTPN4-201ENST00000263708 CGNL1Q0VF96 1302 aa13.77□□□□□ -0.21
PTPN4-201ENST00000263708 PPP1R1BQ9UD71 204 aaPredicted RBP13.77□□□□□ -0.21
PTPN4-201ENST00000263708 HSP90AB3PQ58FF7 597 aa13.76□□□□□ -0.21
PTPN4-201ENST00000263708 BCL2L13Q9BXK5 485 aa13.76□□□□□ -0.21
PTPN4-201ENST00000263708 RNF20Q5VTR2 975 aa13.76□□□□□ -0.21
PTPN4-201ENST00000263708 KIF27Q86VH2 1401 aa13.76□□□□□ -0.21
PTPN4-201ENST00000263708 CDK5RAP3Q96JB5 506 aa13.75□□□□□ -0.21
PTPN4-201ENST00000263708 TSPYL1Q9H0U9 437 aa13.74□□□□□ -0.21
PTPN4-201ENST00000263708 CWC15Q9P013 229 aaKnown RBP13.74□□□□□ -0.21
PTPN4-201ENST00000263708 CCER2I3L3R5 266 aa13.73□□□□□ -0.21
PTPN4-201ENST00000263708 CCDC73Q6ZRK6 1079 aa13.73□□□□□ -0.21
PTPN4-201ENST00000263708 PLIN1O60240 522 aa13.73□□□□□ -0.21
PTPN4-201ENST00000263708 ANKRD18AQ8IVF6 992 aa13.73□□□□□ -0.21
PTPN4-201ENST00000263708 REC8O95072 547 aa13.73□□□□□ -0.21
PTPN4-201ENST00000263708 NAT10Q9H0A0 1025 aaKnown RBP13.73□□□□□ -0.21
PTPN4-201ENST00000263708 G3BP1Q13283 466 aaKnown RBP eCLIP13.73□□□□□ -0.21
PTPN4-201ENST00000263708 RALYLQ86SE5 291 aaKnown RBP13.73□□□□□ -0.21
PTPN4-201ENST00000263708 ARHGAP35Q9NRY4 1499 aa13.72□□□□□ -0.21
PTPN4-201ENST00000263708 SMC3Q9UQE7 1217 aa13.72□□□□□ -0.21
PTPN4-201ENST00000263708 XBP1P17861 261 aa13.72□□□□□ -0.21
PTPN4-201ENST00000263708 TIMELESSQ9UNS1 1208 aa13.72□□□□□ -0.21
PTPN4-201ENST00000263708 RB1CC1Q8TDY2 1594 aa13.72□□□□□ -0.21
PTPN4-201ENST00000263708 AXDND1Q5T1B0 1012 aaPredicted RBP13.72□□□□□ -0.21
PTPN4-201ENST00000263708 KAT6BQ8WYB5 2073 aa13.71□□□□□ -0.21
PTPN4-201ENST00000263708 KRT18P05783 430 aaKnown RBP13.71□□□□□ -0.21
PTPN4-201ENST00000263708 MAGEC2Q9UBF1 373 aaPredicted RBP13.71□□□□□ -0.21
PTPN4-201ENST00000263708 COG3Q96JB2 828 aa13.71□□□□□ -0.21
PTPN4-201ENST00000263708 BRPF1P55201 1214 aaPredicted RBP13.71□□□□□ -0.21
PTPN4-201ENST00000263708 IBSPP21815 317 aaPredicted RBP13.71□□□□□ -0.21
PTPN4-201ENST00000263708 WASHC4Q2M389 1173 aa13.71□□□□□ -0.21
PTPN4-201ENST00000263708 MYO15BQ96JP2 1530 aa13.71□□□□□ -0.22
PTPN4-201ENST00000263708 ERLIN2O94905 339 aa13.71□□□□□ -0.22
PTPN4-201ENST00000263708 ERCC4Q92889 916 aaPredicted RBP13.7□□□□□ -0.22
PTPN4-201ENST00000263708 DDX58O95786 925 aaKnown RBP13.7□□□□□ -0.22
PTPN4-201ENST00000263708 NEUROD6Q96NK8 337 aa13.69□□□□□ -0.22
PTPN4-201ENST00000263708 NEBLO76041 1014 aa13.69□□□□□ -0.22
PTPN4-201ENST00000263708 GOLGA6L10A6NI86 522 aa13.69□□□□□ -0.22
PTPN4-201ENST00000263708 FHAD1B1AJZ9 1412 aa13.69□□□□□ -0.22
PTPN4-201ENST00000263708 ATP2B2Q01814 1243 aa13.69□□□□□ -0.22
PTPN4-201ENST00000263708 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.68□□□□□ -0.22
PTPN4-201ENST00000263708 WASHC2CQ9Y4E1 1318 aa13.68□□□□□ -0.22
PTPN4-201ENST00000263708 SMC2O95347 1197 aa13.68□□□□□ -0.22
PTPN4-201ENST00000263708 PDCL3Q9H2J4 239 aa13.68□□□□□ -0.22
PTPN4-201ENST00000263708 NUP155O75694 1391 aa13.68□□□□□ -0.22
PTPN4-201ENST00000263708 HSP90AB4PQ58FF6 505 aa13.67□□□□□ -0.22
PTPN4-201ENST00000263708 EZRP15311 586 aaKnown RBP13.67□□□□□ -0.22
PTPN4-201ENST00000263708 MATR3P43243 847 aaKnown RBP eCLIP13.67□□□□□ -0.225e-7■■■■□ 25.1
PTPN4-201ENST00000263708 GBP2P32456 591 aaPredicted RBP13.67□□□□□ -0.22
PTPN4-201ENST00000263708 SMARCE1Q969G3 411 aa13.67□□□□□ -0.22
PTPN4-201ENST00000263708 CENPHQ9H3R5 247 aa13.67□□□□□ -0.22
PTPN4-201ENST00000263708 TRAK1Q9UPV9 953 aa13.67□□□□□ -0.22
PTPN4-201ENST00000263708 CEP164Q9UPV0 1460 aa13.67□□□□□ -0.22
PTPN4-201ENST00000263708 CT47B1P0C2W7 299 aaPredicted RBP13.67□□□□□ -0.22
PTPN4-201ENST00000263708 GSE1Q14687 1217 aa13.67□□□□□ -0.22
PTPN4-201ENST00000263708 PSME1Q06323 249 aa13.66□□□□□ -0.22
PTPN4-201ENST00000263708 TAX1BP1Q86VP1 789 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms