RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 NUGGCQ68CJ6 796 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 HGSNATQ68CP4 663 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 FIP1L1Q6UN15 594 aaKnown RBP11.02□□□□□ -0.65
LIG1-220ENST00000601091 LRRC43Q8N309 656 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 SMYD1Q8NB12 490 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 FBXL13Q8NEE6 735 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 KCTD10Q9H3F6 313 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 PREBQ9HCU5 417 aa11.02□□□□□ -0.65
LIG1-220ENST00000601091 DISP2A7MBM2 1401 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 POC1B-GALNT4F8VUJ3 575 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 DDX3XO00571 662 aaKnown RBP eCLIP11.01□□□□□ -0.652e-12■■■□□ 16.8
LIG1-220ENST00000601091 MUSKO15146 869 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 ACSL4O60488 711 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 SORBS3O60504 671 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 TMCC1O94876 653 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 PRKCIP41743 596 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 PSMC5P62195 406 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 PRKG1Q13976 671 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 SKIV2LQ15477 1246 aaKnown RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 SLC35G1Q2M3R5 365 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 HYIQ5T013 277 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 C6orf183Q5T699 404 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 C6orf163Q5TEZ5 329 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 APOBEC3HQ6NTF7 200 aaKnown RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 PPP1R2P3Q6NXS1 205 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 IFNLR1Q8IU57 520 aaPredicted RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 EIF1ADQ8N9N8 165 aaKnown RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 SH2D3AQ9BRG2 576 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 GANQ9H2C0 597 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 ANKFY1Q9P2R3 1169 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 COL1A1P02452 1464 aaPredicted RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 AFF2P51816 1311 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 CYP3A7-CYP3A51PA0A087WV96 503 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 RBAK-RBAKDNI3L0D1 243 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 TSPAN9O75954 239 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 FESP07332 822 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 SNHG28P0DPA3 235 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 ITGA4P13612 1032 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 COMTP21964 271 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 CYP3A7P24462 503 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 GCLCP48506 637 aaPredicted RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 CTCFP49711 727 aaPredicted RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 GMCL1P1Q8NEA9 526 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 SLC7A3Q8WY07 619 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 KLHL29Q96CT2 875 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 UVRAGQ9P2Y5 699 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 LRRD1A4D1F6 860 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 TLR2O60603 784 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 SEC24DO94855 1032 aaPredicted RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 AGTP01019 485 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 MUTP22033 750 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 SFNP31947 248 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 RASSF2P50749 326 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 MARSP56192 900 aaKnown RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 CAV1Q03135 178 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 PPP1R21Q6ZMI0 780 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 MCPH1Q8NEM0 835 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 ARHGEF2Q92974 986 aaKnown RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 SCYL1Q96KG9 808 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 KLC4Q9NSK0 619 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 DUOX1Q9NRD9 1551 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 ZNF142P52746 1687 aaPredicted RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 GOLGB1Q14789 3259 aaKnown RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 PHF20L1A8MW92 1017 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 PLS3P13797 630 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 HOXD10P28358 340 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 YWHABP31946 246 aaKnown RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 BASP1P80723 227 aaKnown RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 GABPAQ06546 454 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 TAF1CQ15572 869 aaPredicted RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 DSTYKQ6XUX3 929 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 ENOSF1Q7L5Y1 443 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 RSAD2Q8WXG1 361 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 INPP4AQ96PE3 977 aaPredicted RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 XPO6Q96QU8 1125 aaKnown RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 MXRA8Q9BRK3 442 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 HEMGNQ9BXL5 484 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 PABPC3Q9H361 631 aaKnown RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 RAVER2Q9HCJ3 691 aaKnown RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 ADAM22Q9P0K1 906 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 SALL4Q9UJQ4 1053 aa11.01□□□□□ -0.65
LIG1-220ENST00000601091 MAGED1Q9Y5V3 778 aaPredicted RBP11.01□□□□□ -0.65
LIG1-220ENST00000601091 MARF1Q9Y4F3 1742 aaKnown RBP11□□□□□ -0.65
LIG1-220ENST00000601091 LAMA4Q16363 1823 aa11□□□□□ -0.65
LIG1-220ENST00000601091 MYH8P13535 1937 aa11□□□□□ -0.65
LIG1-220ENST00000601091 MEIS2O14770 477 aa11□□□□□ -0.65
LIG1-220ENST00000601091 S100BP04271 92 aaPredicted RBP11□□□□□ -0.65
LIG1-220ENST00000601091 POLR2BP30876 1174 aaKnown RBP11□□□□□ -0.65
LIG1-220ENST00000601091 PHBP35232 272 aa11□□□□□ -0.65
LIG1-220ENST00000601091 MAPK7Q13164 816 aa11□□□□□ -0.65
LIG1-220ENST00000601091 HADHQ16836 314 aaKnown RBP11□□□□□ -0.65
LIG1-220ENST00000601091 PALM2Q8IXS6 379 aa11□□□□□ -0.65
LIG1-220ENST00000601091 LSM14AQ8ND56 463 aaKnown RBP11□□□□□ -0.65
LIG1-220ENST00000601091 CCHCR1Q8TD31 782 aa11□□□□□ -0.65
LIG1-220ENST00000601091 C1orf54Q8WWF1 131 aa11□□□□□ -0.65
LIG1-220ENST00000601091 SEC16BQ96JE7 1060 aa11□□□□□ -0.65
LIG1-220ENST00000601091 CFAP57Q96MR6 1250 aa11□□□□□ -0.65
LIG1-220ENST00000601091 FERMT1Q9BQL6 677 aa11□□□□□ -0.65
LIG1-220ENST00000601091 TIPINQ9BVW5 301 aa11□□□□□ -0.65
LIG1-220ENST00000601091 KIAA1586Q9HCI6 787 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 152.3 ms