RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TNFRSF8P28908 595 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 FDFT1P37268 417 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 AARSP49588 968 aaKnown RBP eCLIP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 EXOSC10Q01780 885 aaKnown RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SPOPLQ6IQ16 392 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 RIN3Q8TB24 985 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 GLMNQ92990 594 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 IL17RAQ96F46 866 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 OTUB1Q96FW1 271 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SERPINB12Q96P63 405 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 NUP85Q9BW27 656 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 HPCAL4Q9UM19 191 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.23□□□□□ -1.09
VPS13D-211ENST00000543710 SH3BP1Q9Y3L3 701 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 ADGRG1Q9Y653 693 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 NDUFB9Q9Y6M9 179 aa8.23□□□□□ -1.09
VPS13D-211ENST00000543710 LRRIQ3A6PVS8 624 aaPredicted RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 IFNB1P01574 187 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 FGGP02679 453 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 TMEM253P0C7T8 217 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 ACADSP16219 412 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 MDH1P40925 334 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 HK2P52789 917 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 PUS10Q3MIT2 529 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 ADCK5Q3MIX3 580 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 LRRC31Q6UY01 552 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 ANKS3Q6ZW76 656 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 ITIH5Q86UX2 942 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 FAM122AQ96E09 287 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 TGS1Q96RS0 853 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 ISCA1Q9BUE6 129 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 AIPL1Q9NZN9 384 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 ZMYM2Q9UBW7 1377 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 CD163L1Q9NR16 1453 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 VIRMAQ69YN4 1812 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 NVLO15381 856 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 KRT14P02533 472 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 RALAP11233 206 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 CYP19A1P11511 503 aaPredicted RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 EFHC2Q5JST6 749 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 OR6B2Q6IFH4 312 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 MSL3Q8N5Y2 521 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 CCDC126Q96EE4 140 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 MAML3Q96JK9 1138 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 MMTAG2Q9BU76 263 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 ISCUQ9H1K1 167 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 CHCHD3Q9NX63 227 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 PKD2L2Q9NZM6 624 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 DUOX1Q9NRD9 1551 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 KANSL1LA0AUZ9 987 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 TRPC5OSA6NMA1 111 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 CLASP2O75122 1294 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 HOXD11P31277 338 aaPredicted RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 NEK2P51955 445 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 FIGNQ5HY92 759 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 SUSD4Q5VX71 490 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 TRIM67Q6ZTA4 783 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 DDX53Q86TM3 631 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 MRRFQ96E11 262 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 IFT43Q96FT9 208 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 ZNF302Q9NR11 478 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 ST7Q9NRC1 585 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 KANSL3Q9P2N6 904 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 ITGB1BP2Q9UKP3 347 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 NEDD4P46934 1319 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 KLRC2P26717 231 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 GGCXP38435 758 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 BASP1P80723 227 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 PEX6Q13608 980 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 ELOAQ14241 798 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 TBC1D16Q8TBP0 767 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 SDR42E1Q8WUS8 393 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 SNX19Q92543 992 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 CNOT8Q9UFF9 292 aaKnown RBP8.22□□□□□ -1.09
VPS13D-211ENST00000543710 PCDHB6Q9Y5E3 794 aa8.22□□□□□ -1.09
VPS13D-211ENST00000543710 LMO7Q8WWI1 1683 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 LRRC53A6NM62 1247 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 CYP2C8P10632 490 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 TKTP29401 623 aaKnown RBP8.21□□□□□ -1.09
VPS13D-211ENST00000543710 MRPS35P82673 323 aaKnown RBP8.21□□□□□ -1.09
VPS13D-211ENST00000543710 BTNL9Q6UXG8 535 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 SPATA21Q7Z572 469 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 ZNF467Q7Z7K2 595 aaPredicted RBP8.21□□□□□ -1.09
VPS13D-211ENST00000543710 DCP1BQ8IZD4 617 aaKnown RBP8.21□□□□□ -1.09
VPS13D-211ENST00000543710 KLHDC4Q8TBB5 520 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 FGD4Q96M96 766 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 HEXIM2Q96MH2 286 aaKnown RBP8.21□□□□□ -1.09
VPS13D-211ENST00000543710 GPR20Q99678 358 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 APBA2Q99767 749 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 SLC38A7Q9NVC3 462 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 FBXO2Q9UK22 296 aaPredicted RBP8.21□□□□□ -1.09
VPS13D-211ENST00000543710 SNX12Q9UMY4 172 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 RASA4BC9J798 803 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 RASA4O43374 803 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 EGFRP00533 1210 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 C4BPBP20851 252 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 ATP6V1E1P36543 226 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 ZNF699Q32M78 642 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 LINC00523Q86TU6 105 aa8.21□□□□□ -1.09
VPS13D-211ENST00000543710 APPL2Q8NEU8 664 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms