RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 LINC00271P0C7V0 271 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 LRPAP1P30533 357 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 MXI1P50539 228 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 MARSP56192 900 aaKnown RBP16.14■□□□□ 0.17
NUP54-213ENST00000513352 RBP5P82980 135 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 MYL7Q01449 175 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 KRT17Q04695 432 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 ENPEPQ07075 957 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 PPP3CAQ08209 521 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 UPP1Q16831 310 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 HABP4Q5JVS0 413 aaKnown RBP16.14■□□□□ 0.17
NUP54-213ENST00000513352 C1orf220Q5T0J3 134 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 TDRD10Q5VZ19 366 aaKnown RBP16.14■□□□□ 0.17
NUP54-213ENST00000513352 DCLRE1AQ6PJP8 1040 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 TMEM173Q86WV6 379 aaPredicted RBP16.14■□□□□ 0.17
NUP54-213ENST00000513352 TRIM59Q8IWR1 403 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 SLC39A11Q8N1S5 342 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 BCL7CQ8WUZ0 217 aaPredicted RBP16.14■□□□□ 0.17
NUP54-213ENST00000513352 LRCH3Q96II8 777 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 ZNF560Q96MR9 790 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 C11orf84Q9BUA3 381 aaPredicted RBP16.14■□□□□ 0.17
NUP54-213ENST00000513352 ZNF576Q9H609 170 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 TAB2Q9NYJ8 693 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 ADAM28Q9UKQ2 775 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 PLXNA4Q9HCM2 1894 aa16.14■□□□□ 0.17
NUP54-213ENST00000513352 AFPP02771 609 aaKnown RBP16.13■□□□□ 0.17
NUP54-213ENST00000513352 ITGB1P05556 798 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 EEF1GP26641 437 aaKnown RBP16.13■□□□□ 0.17
NUP54-213ENST00000513352 GTF2H1P32780 548 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 CA8P35219 290 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 CLDN10P78369 228 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 NCAPHQ15003 741 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 IQCB1Q15051 598 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 TCP11X2Q5H9J9 407 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 ZNF697Q5TEC3 545 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 CDKAL1Q5VV42 579 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 SV2AQ7L0J3 742 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 RNF214Q8ND24 703 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 C3orf58Q8NDZ4 430 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 GDPD5Q8WTR4 605 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 SLC35C1Q96A29 364 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 IGSF21Q96ID5 467 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 TUBGCP2Q9BSJ2 902 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 PLVAPQ9BX97 442 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 TMEM8AQ9HCN3 771 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.13■□□□□ 0.17
NUP54-213ENST00000513352 MARCH5Q9NX47 278 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 SIX4Q9UIU6 781 aa16.13■□□□□ 0.17
NUP54-213ENST00000513352 SF3B1O75533 1304 aaKnown RBP eCLIP16.13■□□□□ 0.17
NUP54-213ENST00000513352 ANO9A1A5B4 782 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 I3L4J1 428 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 N4BP1O75113 896 aaKnown RBP16.12■□□□□ 0.17
NUP54-213ENST00000513352 HLA-DRAP01903 254 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 C4BPAP04003 597 aaKnown RBP16.12■□□□□ 0.17
NUP54-213ENST00000513352 RB1P06400 928 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 PNPLA4P41247 253 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 BRCC3P46736 316 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 TAF6P49848 677 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 KCNH2Q12809 1159 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 MYO1EQ12965 1108 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 GPM6BQ13491 265 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 NCOA4Q13772 614 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 MAN2A1Q16706 1144 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 ZACNQ401N2 412 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 SV2CQ496J9 727 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 KRT39Q6A163 491 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 FUT10Q6P4F1 479 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 DSTYKQ6XUX3 929 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 IMPG2Q9BZV3 1241 aa16.12■□□□□ 0.17
NUP54-213ENST00000513352 ALG13Q9NP73 1137 aaKnown RBP16.12■□□□□ 0.17
NUP54-213ENST00000513352 PUF60Q9UHX1 559 aaKnown RBP16.12■□□□□ 0.17
NUP54-213ENST00000513352 COL4A4P53420 1690 aaPredicted RBP16.11■□□□□ 0.17
NUP54-213ENST00000513352 C5orf67F2Z3F1 127 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 TMEM189-UBE2V1I3L0A0 370 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 PIRO00625 290 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 TRAPPC3O43617 180 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 IGFBP6P24592 240 aaPredicted RBP16.11■□□□□ 0.17
NUP54-213ENST00000513352 FMO5P49326 533 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 MYL6P60660 151 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 CETN1Q12798 172 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 KRT31Q15323 416 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 ZNF699Q32M78 642 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 CBWD6Q4V339 395 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 CBWD3Q5JTY5 395 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 CBWD5Q5RIA9 395 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 SCARA3Q6AZY7 606 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 CEP57Q86XR8 500 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 LRRC52Q8N7C0 313 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 CCDC150Q8NCX0 1101 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 HPDLQ96IR7 371 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 FAM161BQ96MY7 647 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 VPS16Q9H269 839 aa16.11■□□□□ 0.17
NUP54-213ENST00000513352 TMEM265A0A087WTH1 108 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 EPOPA6NHQ4 379 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 RFXAPO00287 272 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 VNN1O95497 513 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 CST3P01034 146 aaPredicted RBP16.1■□□□□ 0.17
NUP54-213ENST00000513352 ATP1A3P13637 1013 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 ELAVL2Q12926 359 aaKnown RBP16.1■□□□□ 0.17
NUP54-213ENST00000513352 KIAA1841Q6NSI8 718 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms