RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 CYTH3O43739 400 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 ADAM23O75077 832 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 FTLP02792 175 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 TFAP2AP05549 437 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 TNFAIP3P21580 790 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 BGNP21810 368 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 PMLP29590 882 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 GTF2H1P32780 548 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 CSE1LP55060 971 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 ARL4CP56559 192 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 PDE1BQ01064 536 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 GSTM4Q03013 218 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 FOLH1Q04609 750 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 PFKFB3Q16875 520 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 FAM26FQ5R3K3 315 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 C10orf76Q5T2E6 689 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 C6orf52Q5T4I8 152 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 XKR5Q6UX68 686 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 RNF207Q6ZRF8 634 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 GSTA5Q7RTV2 222 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 TRIM59Q8IWR1 403 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 ATP11CQ8NB49 1132 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 RAPGEF4Q8WZA2 1011 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 MTBPQ96DY7 904 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 TRIM11Q96F44 468 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 C7orf25Q9BPX7 421 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 TAOK3Q9H2K8 898 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 KIAA1586Q9HCI6 787 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 ACSS2Q9NR19 701 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 PCDHA4Q9UN74 947 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 TMEM98Q9Y2Y6 226 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 NEU2Q9Y3R4 380 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 C4AP0C0L4 1744 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 C4BP0C0L5 1744 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 RSPH10B2B2RC85 870 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 EIF3FO00303 357 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 FCHO1O14526 889 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 AKAP3O75969 853 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 C6orf222P0C671 652 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 RSPH10BP0C881 870 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 ETFBP38117 255 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 CD151P48509 253 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 TMED10P49755 219 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 EIF2B2P49770 351 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 CDH15P55291 814 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 ZNF200P98182 395 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 COG2Q14746 738 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 DRAP1Q14919 205 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 TLR1Q15399 786 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 SGO2Q562F6 1265 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 USP17L2Q6R6M4 530 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 TMTC2Q8N394 836 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 NME8Q8N427 588 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 ZNF713Q8N859 430 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 OR6Y1Q8NGX8 325 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 INPP5DQ92835 1189 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 PPP1R36Q96LQ0 422 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 RILPQ96NA2 401 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 LRRC27Q9C0I9 530 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 PAIP1Q9H074 479 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 DNAJC18Q9H819 358 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 ZFYVE28Q9HCC9 887 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 EMILIN3Q9NT22 766 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 AIPL1Q9NZN9 384 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 FZD1Q9UP38 647 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 BCL9LQ86UU0 1499 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 ABCB11O95342 1321 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 E2F8A0AVK6 867 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 SMCO2A6NFE2 343 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 PHF2O75151 1096 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 IFNB1P01574 187 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 NPM1P06748 294 aaKnown RBP eCLIP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 TNNI2P48788 182 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 AMPD3Q01432 767 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 UBE2SQ16763 222 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 B3GNT6Q6ZMB0 384 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 SESTD1Q86VW0 696 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.67□□□□□ -1.185e-6■■■■□ 19.4
LIMCH1-207ENST00000508466 KAT5Q92993 513 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 ART4Q93070 314 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 CNOT7Q9UIV1 285 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 PCDHA3Q9Y5H8 950 aa7.67□□□□□ -1.18
LIMCH1-207ENST00000508466 UMODL1Q5DID0 1318 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 C15orf38-AP3S2A0A0A6YYH1 394 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 PI4K2BG5E9Z4 385 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 FBP2O00757 339 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 USP17L8P0C7I0 530 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 CCDC166P0CW27 439 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 BCRP11274 1271 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 NKX2-5P52952 324 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 NRLP54845 237 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 VCPP55072 806 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 TFAP4Q01664 338 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 CYP4A11Q02928 519 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 DCTN2Q13561 401 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 PPP2R5BQ15173 497 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 RASA2Q15283 850 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 GPR162Q16538 588 aa7.66□□□□□ -1.18
LIMCH1-207ENST00000508466 ARSHQ5FYA8 562 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms