RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 KRT85P78386 507 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 PPP3CAQ08209 521 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 MRPL49Q13405 166 aaKnown RBP4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 R3HDM1Q15032 1099 aaKnown RBP4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 ACAP2Q15057 778 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 PTPN21Q16825 1174 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 LCE1DQ5T752 114 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 SPTY2D1Q68D10 685 aaPredicted RBP4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 MFSD5Q6N075 450 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 Q6ZVL8 140 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 ZNF808Q8N4W9 903 aaPredicted RBP4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 PPM1NQ8N819 430 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 STAG1Q8WVM7 1258 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 BORCS6Q96GS4 357 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 SIN3AQ96ST3 1273 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 CDK5RAP1Q96SZ6 601 aaKnown RBP4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 SMAD5Q99717 465 aaKnown RBP4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 ADI1Q9BV57 179 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 SLC13A1Q9BZW2 595 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 DMRT3Q9NQL9 472 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 TYW1Q9NV66 732 aaKnown RBP4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 DDX56Q9NY93 547 aaKnown RBP4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 GPRC5DQ9NZD1 345 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 TESMINQ9Y4I5 508 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 MRFAP1Q9Y605 127 aa4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 BRD4O60885 1362 aaPredicted RBP4.76□□□□□ -1.65
CKS1BP3-201ENST00000600888 CENPJQ9HC77 1338 aaPredicted RBP4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 GLI3P10071 1580 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 MUSKO15146 869 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 XPOTO43592 962 aaKnown RBP4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 MFAP3LO75121 409 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 NDUFS2O75306 463 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 ADRB1P08588 477 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 CCND1P24385 295 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 HIBADHP31937 336 aaKnown RBP4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 APBA1Q02410 837 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 PRKD1Q15139 912 aaPredicted RBP4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 NOMO1Q15155 1222 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 CDSNQ15517 529 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 ELAVL1Q15717 326 aaKnown RBP4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 MST1LQ2TV78 715 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 GJC2Q5T442 439 aaPredicted RBP4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 PNMA8AQ86V59 439 aaPredicted RBP4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 GSPT2Q8IYD1 628 aaKnown RBP4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 ANKRD35Q8N283 1001 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 ZNF480Q8WV37 535 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 MIEF2Q96C03 454 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 IL17RAQ96F46 866 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 CDC5LQ99459 802 aaKnown RBP4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 TRPC5Q9UL62 973 aaPredicted RBP4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 DNM3Q9UQ16 869 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 TSC22D4Q9Y3Q8 395 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 MON2Q7Z3U7 1717 aa4.75□□□□□ -1.65
CKS1BP3-201ENST00000600888 USP54Q70EL1 1684 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 RGS12O14924 1447 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 CAPN14A8MX76 684 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 PDGFRBP09619 1106 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 C5AR1P21730 350 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 ECHS1P30084 290 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 CRHR1P34998 444 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 ODF1Q14990 250 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 FAM214AQ32MH5 1076 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 APBB1IPQ7Z5R6 666 aaPredicted RBP4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 PALM2Q8IXS6 379 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 ELOA2Q8IYF1 753 aaPredicted RBP4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 NRG4Q8WWG1 115 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 HOXB13Q92826 284 aaPredicted RBP4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 TEKT5Q96M29 485 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 GPR20Q99678 358 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 CDK19Q9BWU1 502 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 EPC1Q9H2F5 836 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 BCO1Q9HAY6 547 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 TRPS1Q9UHF7 1281 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 TUBD1Q9UJT1 453 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 RALGAPBQ86X10 1494 aa4.74□□□□□ -1.65
CKS1BP3-201ENST00000600888 PLSCR1O15162 318 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 CYP27B1O15528 508 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 ADCY6O43306 1168 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 GNAT2P19087 354 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 PTPN7P35236 360 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 WASP42768 502 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 PER3P56645 1201 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 KRTAP10-2P60368 255 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 MGAT2Q10469 447 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 SEPT2Q15019 361 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 NBPF8Q3BBV2 869 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 PDZD4Q76G19 769 aaPredicted RBP4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 UNC5CLQ8IV45 518 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 NGDNQ8NEJ9 315 aaKnown RBP4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 REPS2Q8NFH8 660 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 MDGA1Q8NFP4 955 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 OR7D4Q8NG98 312 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 MDM1Q8TC05 714 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 ST8SIA2Q92186 375 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 DPF2Q92785 391 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 LSM14BQ9BX40 385 aaKnown RBP4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 INTUQ9ULD6 942 aa4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 ROCK2O75116 1388 aaKnown RBP4.73□□□□□ -1.65
CKS1BP3-201ENST00000600888 NRKQ7Z2Y5 1582 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms