RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 OR52E8Q6IFG1 317 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 CLNKQ7Z7G1 428 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 TRABD2AQ86V40 505 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 ARHGAP24Q8N264 748 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 PHC3Q8NDX5 983 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 C10orf82Q8WW14 230 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 RBM41Q96IZ5 413 aaKnown RBP13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 BTBD10Q9BSF8 475 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 MKNK1Q9BUB5 465 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 SYNCQ9H7C4 482 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 LRRC4BQ9NT99 713 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 ANKFY1Q9P2R3 1169 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 TAF1P21675 1872 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 GOLGA8RI6L899 631 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 PSMG1O95456 288 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 SPATA31C1P0DKV0 1188 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 KRT5P13647 590 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 MOGSQ13724 837 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 SLC45A4Q5BKX6 768 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 RINT1Q6NUQ1 792 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 PCDHB18PQ96TA0 734 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 TTC1Q99614 292 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 EIF2AK1Q9BQI3 630 aaKnown RBP13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 TRIM55Q9BYV6 548 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 HNRNPCL1O60812 293 aaKnown RBP13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 POTEJP0CG39 1038 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 ARFIP2P53365 341 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 SIX1Q15475 284 aaPredicted RBP13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 SLC1A5Q15758 541 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 QRICH1Q2TAL8 776 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 KAZNQ674X7 775 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 SYDE1Q6ZW31 735 aaPredicted RBP13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 BICD1Q96G01 975 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 KIAA1586Q9HCI6 787 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 PCMTD2Q9NV79 361 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 LAMB1P07942 1786 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 SNED1Q8TER0 1413 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 LTBP4Q8N2S1 1624 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 ATP2A1O14983 1001 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 TBX10O75333 385 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 PGM1P36871 562 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 HADHBP55084 474 aaKnown RBP13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 PPP4CP60510 307 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 PLCB3Q01970 1234 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 BMT2Q1RMZ1 405 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 RHBDF2Q6PJF5 856 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 PTF1AQ7RTS3 328 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 SLC47A2Q86VL8 602 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 RIBC1Q8N443 379 aaPredicted RBP13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 OLIG1Q8TAK6 271 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 SPIRE2Q8WWL2 714 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 ZNF75CPQ92670 426 aaPredicted RBP13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 KLF6Q99612 283 aaPredicted RBP13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 ZNF184Q99676 751 aaPredicted RBP13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 SYT11Q9BT88 431 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 GLT8D2Q9H1C3 349 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 KCNQ2O43526 872 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 CIB2O75838 187 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 KRT4P19013 534 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 TBC1D10BQ4KMP7 808 aaPredicted RBP13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 CMPK2Q5EBM0 449 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 GPATCH4Q5T3I0 446 aaKnown RBP13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 NOP9Q86U38 636 aaKnown RBP13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 C12orf50Q8NA57 414 aaPredicted RBP13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 NSL1Q96IY1 281 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 MIPEPQ99797 713 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 DCLK3Q9C098 648 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 ARL8BQ9NVJ2 186 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 ANGPTL2Q9UKU9 493 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 ZNF148Q9UQR1 794 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 FRMPD4Q14CM0 1322 aa13.61□□□□□ -0.23
SFSWAP-209ENST00000540469 hCG_2014768A0A024R1R8 64 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 FSCN2O14926 492 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 SORBS3O60504 671 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 IFNB1P01574 187 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 RALAP11233 206 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 ETS2P15036 469 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 RFX1P22670 979 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 CLK2P49760 499 aaKnown RBP13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 DLG4P78352 724 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 ITPK1Q13572 414 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 DDB1Q16531 1140 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 PCNX4Q63HM2 1172 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 ZBED8Q8IZ13 594 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 CENPKQ9BS16 269 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 SAR1AQ9NR31 198 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 OLFML3Q9NRN5 406 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 R3HDM2Q9Y2K5 976 aaKnown RBP13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 K7ENM7 598 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 ZBTB39O15060 712 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 EIF3DO15371 548 aaKnown RBP eCLIP13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 OCRLQ01968 901 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 IZUMO2Q6UXV1 221 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 CEP128Q6ZU80 1094 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 OPTNQ96CV9 577 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 DTNBP1Q96EV8 351 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 SETDB2Q96T68 719 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 NDNQ99608 321 aa13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 RTFDC1Q9BY42 306 aaPredicted RBP13.6□□□□□ -0.23
SFSWAP-209ENST00000540469 GTF3C4Q9UKN8 822 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms