RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	ABLIM3	O94929	683 aa		13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	CHRNB1	P11230	501 aa		13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	XRCC6	P12956	609 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	ATF2	P15336	505 aa		13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	TKT	P29401	623 aa	Known RBP	13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	GDI1	P31150	447 aa		13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	HOXA6	P31267	233 aa		13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	ANP32A	P39687	249 aa	Known RBP	13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	SATB1	Q01826	763 aa		13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	PRPF4B	Q13523	1007 aa	Known RBP	13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	MAPK6	Q16659	721 aa		13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	TMEM132A	Q24JP5	1023 aa		13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	VIT	Q6UXI7	678 aa		13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	TCEAL8	Q8IYN2	117 aa		13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	ZNF274	Q96GC6	653 aa	Predicted RBP	13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	PPP1R10	Q96QC0	940 aa	Known RBP	13.7	□□□□□ -0.22
CAPN1-223	ENST00000533079	STK36	Q9NRP7	1315 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	ZNF263	O14978	683 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	USO1	O60763	962 aa	Known RBP	13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	CDKL5	O76039	1030 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	CLCNKB	P51801	687 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	UPP1	Q16831	310 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	AASDH	Q4L235	1098 aa	Predicted RBP	13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	CYP4A22	Q5TCH4	519 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	TPGS2	Q68CL5	300 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	IQCE	Q6IPM2	695 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	PIK3AP1	Q6ZUJ8	805 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	LOXL4	Q96JB6	756 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	CORO1B	Q9BR76	489 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	GPR88	Q9GZN0	384 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	C8orf33	Q9H7E9	229 aa	Predicted RBP	13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	PCDHA12	Q9UN75	941 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	INSL5	Q9Y5Q6	135 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	ASPM	Q8IZT6	3477 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	DOCK6	Q96HP0	2047 aa		13.69	□□□□□ -0.22
CAPN1-223	ENST00000533079	CHURC1-FNTB	B4DL54	471 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079		H7C4K7	107 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079		K7ESF4	209 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	ARNTL	O00327	626 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	ACKR2	O00590	384 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	SYN3	O14994	580 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	HR	O43593	1189 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	GDF9	O60383	454 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	PRKCB	P05771	671 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	FNTB	P49356	437 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	EPHA5	P54756	1037 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	DGKK	Q5KSL6	1271 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	POTEH	Q6S545	545 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	RUFY3	Q7L099	469 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	WDR5B	Q86VZ2	330 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	MFSD6L	Q8IWD5	586 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	FAM160A2	Q8N612	972 aa	Predicted RBP	13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	C12orf50	Q8NA57	414 aa	Predicted RBP	13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	CSGALNACT1	Q8TDX6	532 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	KCNJ14	Q9UNX9	436 aa		13.68	□□□□□ -0.22
CAPN1-223	ENST00000533079	KCNA4	P22459	653 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	CCNE1	P24864	410 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	NAMPT	P43490	491 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	TOB2	Q14106	344 aa	Predicted RBP	13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	GAS6	Q14393	721 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	PPP2R5A	Q15172	486 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	CEP68	Q76N32	757 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	NOSTRIN	Q8IVI9	506 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	SYNPO	Q8N3V7	929 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	TCEAL4	Q96EI5	215 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	AIFM3	Q96NN9	605 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	CCDC113	Q9H0I3	377 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	UPF2	Q9HAU5	1272 aa	Known RBP	13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	CYP4F11	Q9HBI6	524 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	ASAH2	Q9NR71	780 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	TOPORS	Q9NS56	1045 aa	Predicted RBP	13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	SLC38A7	Q9NVC3	462 aa		13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	PDCD11	Q14690	1871 aa	Known RBP	13.67	□□□□□ -0.22
CAPN1-223	ENST00000533079	GREB1	Q4ZG55	1949 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	CCDC163	A0A0D9SF12	145 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	TM4SF5	O14894	197 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	CHAD	O15335	359 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	ZNF806	P0C7X5	589 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	CCR2	P41597	374 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	EFNA5	P52803	228 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	FCHO2	Q0JRZ9	810 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	CALCRL	Q16602	461 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	GLRA4	Q5JXX5	417 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	RALGPS2	Q86X27	583 aa	Predicted RBP	13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	YAF2	Q8IY57	180 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	C3orf58	Q8NDZ4	430 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	PIGO	Q8TEQ8	1089 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	ZNF512	Q96ME7	567 aa	Predicted RBP	13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	TTC12	Q9H892	705 aa	Predicted RBP	13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	BRMS1	Q9HCU9	246 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	GPRC5C	Q9NQ84	441 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	GDA	Q9Y2T3	454 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	PCDHGA5	Q9Y5G8	931 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	SPEG	Q15772	3267 aa		13.66	□□□□□ -0.22
CAPN1-223	ENST00000533079	SPTBN2	O15020	2390 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	MYBPHL	A2RUH7	354 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	TTLL13P	A6NNM8	815 aa		13.65	□□□□□ -0.22
CAPN1-223	ENST00000533079	EPB41L2	O43491	1005 aa	Known RBP	13.65	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms