RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 ASB7Q9H672 318 aa14.51□□□□□ -0.09
VPS28-210ENST00000529182 UBE2ZQ9H832 354 aaPredicted RBP14.51□□□□□ -0.09
VPS28-210ENST00000529182 CHST7Q9NS84 486 aa14.51□□□□□ -0.09
VPS28-210ENST00000529182 RBAKQ9NYW8 714 aaPredicted RBP14.51□□□□□ -0.09
VPS28-210ENST00000529182 UBQLN1Q9UMX0 589 aaKnown RBP14.51□□□□□ -0.09
VPS28-210ENST00000529182 PDCD11Q14690 1871 aaKnown RBP14.5□□□□□ -0.09
VPS28-210ENST00000529182 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.5□□□□□ -0.09
VPS28-210ENST00000529182 H3BQ06 376 aaPredicted RBP14.5□□□□□ -0.09
VPS28-210ENST00000529182 TMEM189-UBE2V1I3L0A0 370 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 LILRB3O75022 631 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 GLP2RO95838 553 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 CNPP09543 421 aaKnown RBP14.5□□□□□ -0.09
VPS28-210ENST00000529182 CYP3A5P20815 502 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 KCNA5P22460 613 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 LTBRP36941 435 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 GLUD2P49448 558 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 DSG1Q02413 1049 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 ADAM15Q13444 863 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 BMS1Q14692 1282 aaKnown RBP14.5□□□□□ -0.09
VPS28-210ENST00000529182 COL19A1Q14993 1142 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 CTC1Q2NKJ3 1217 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 USP41Q3LFD5 358 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 FAM171A1Q5VUB5 890 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 KIAA0319Q5VV43 1072 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 ISM2Q6H9L7 571 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 CEP57Q86XR8 500 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 EFHBQ8N7U6 833 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 RDH13Q8NBN7 331 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 RIN2Q8WYP3 895 aaPredicted RBP14.5□□□□□ -0.09
VPS28-210ENST00000529182 SMARCE1Q969G3 411 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 DDX27Q96GQ7 796 aaKnown RBP14.5□□□□□ -0.09
VPS28-210ENST00000529182 KCTD10Q9H3F6 313 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 PDE11AQ9HCR9 933 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 MRPL17Q9NRX2 175 aaKnown RBP14.5□□□□□ -0.09
VPS28-210ENST00000529182 STK39Q9UEW8 545 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 COG5Q9UP83 839 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 IRAK3Q9Y616 596 aa14.5□□□□□ -0.09
VPS28-210ENST00000529182 ANK1P16157 1881 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 KIAA0391O15091 583 aaKnown RBP14.49□□□□□ -0.09
VPS28-210ENST00000529182 CLASP2O75122 1294 aaKnown RBP14.49□□□□□ -0.09
VPS28-210ENST00000529182 TBX10O75333 385 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 IL18RAPO95256 599 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 SMC2O95347 1197 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 RPL17P18621 184 aaKnown RBP14.49□□□□□ -0.09
VPS28-210ENST00000529182 TKTP29401 623 aaKnown RBP14.49□□□□□ -0.09
VPS28-210ENST00000529182 LRPAP1P30533 357 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 RPL9P32969 192 aaKnown RBP14.49□□□□□ -0.09
VPS28-210ENST00000529182 POU5F1Q01860 360 aaKnown RBP14.49□□□□□ -0.09
VPS28-210ENST00000529182 CLUL1Q15846 466 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 SPATA1Q5VX52 437 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 LMBRD2Q68DH5 695 aaPredicted RBP14.49□□□□□ -0.09
VPS28-210ENST00000529182 KIAA1841Q6NSI8 718 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 PRSS55Q6UWB4 352 aaPredicted RBP14.49□□□□□ -0.09
VPS28-210ENST00000529182 XXYLT1Q8NBI6 393 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 BEST2Q8NFU1 509 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 SPATA20Q8TB22 786 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 KLHL5Q96PQ7 755 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 HOOK1Q9UJC3 728 aaKnown RBP14.49□□□□□ -0.09
VPS28-210ENST00000529182 BARX2Q9UMQ3 279 aaPredicted RBP14.49□□□□□ -0.09
VPS28-210ENST00000529182 DERAQ9Y315 318 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 C2CD2Q9Y426 696 aa14.49□□□□□ -0.09
VPS28-210ENST00000529182 PTPRJQ12913 1337 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 ZNF233A6NK53 670 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 XPOTO43592 962 aaKnown RBP14.48□□□□□ -0.09
VPS28-210ENST00000529182 NCK2O43639 380 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 NDUFV1P49821 464 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 KCNQ1P51787 676 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 SNRPFP62306 86 aaKnown RBP14.48□□□□□ -0.09
VPS28-210ENST00000529182 TFAMQ00059 246 aaKnown RBP14.48□□□□□ -0.09
VPS28-210ENST00000529182 SNRNP35Q16560 246 aaKnown RBP14.48□□□□□ -0.09
VPS28-210ENST00000529182 CAMK4Q16566 473 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 SCARA3Q6AZY7 606 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 GLYCTKQ8IVS8 523 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 C12orf56Q8IXR9 622 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 ELOA2Q8IYF1 753 aaPredicted RBP14.48□□□□□ -0.09
VPS28-210ENST00000529182 GUF1Q8N442 669 aaKnown RBP14.48□□□□□ -0.09
VPS28-210ENST00000529182 FBXL18Q96ME1 805 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 GSDMAQ96QA5 445 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 TSPAN18Q96SJ8 248 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 CDCA3Q99618 268 aaPredicted RBP14.48□□□□□ -0.09
VPS28-210ENST00000529182 TTPALQ9BTX7 342 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 LMBRD1Q9NUN5 540 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 RMND1Q9NWS8 449 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 CLEC1BQ9P126 229 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 CGNQ9P2M7 1197 aaKnown RBP14.48□□□□□ -0.09
VPS28-210ENST00000529182 MAN1B1Q9UKM7 699 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 NUB1Q9Y5A7 615 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 HCFC2Q9Y5Z7 792 aa14.48□□□□□ -0.09
VPS28-210ENST00000529182 PDXKO00764 312 aa14.47□□□□□ -0.09
VPS28-210ENST00000529182 TEX28O15482 410 aa14.47□□□□□ -0.09
VPS28-210ENST00000529182 EXOC3O60645 756 aa14.47□□□□□ -0.09
VPS28-210ENST00000529182 EPCAMP16422 314 aa14.47□□□□□ -0.09
VPS28-210ENST00000529182 FGFR3P22607 806 aa14.47□□□□□ -0.09
VPS28-210ENST00000529182 KLRC2P26717 231 aa14.47□□□□□ -0.09
VPS28-210ENST00000529182 MCM4P33991 863 aa14.47□□□□□ -0.09
VPS28-210ENST00000529182 PRCPP42785 496 aa14.47□□□□□ -0.09
VPS28-210ENST00000529182 ELAVL2Q12926 359 aaKnown RBP14.47□□□□□ -0.09
VPS28-210ENST00000529182 KCNC3Q14003 757 aa14.47□□□□□ -0.09
VPS28-210ENST00000529182 ZNF658Q5TYW1 1059 aaPredicted RBP14.47□□□□□ -0.09
VPS28-210ENST00000529182 C9orf57Q5W0N0 161 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms