RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 RPN2P04844 631 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 HPGDP15428 266 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 ITGA1P56199 1179 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 RAB2AP61019 212 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 ENOPH1Q9UHY7 261 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 FEN1P39748 380 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 BTDP43251 543 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 CDK17Q00537 523 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 LCORLQ8N3X6 602 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 KANSL2Q9H9L4 492 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 SPASTQ9UBP0 616 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 PITPNM2Q9BZ72 1349 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 PRR23AA6NEV1 266 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 GNA15P30679 374 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 KBTBD12Q3ZCT8 623 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 LONP2Q86WA8 852 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 STKLD1Q8NE28 680 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 DNAJC9Q8WXX5 260 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 NPHS2Q9NP85 383 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 INSRP06213 1382 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 CCNE1P24864 410 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 LRRC36Q1X8D7 754 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 TRPM8Q7Z2W7 1104 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 ATP8B4Q8TF62 1192 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 RHBDL2Q9NX52 303 aa14.6□□□□□ -0.07
CCDC88A-201ENST00000263630 PCF11O94913 1555 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 NESP48681 1621 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 WWP2O00308 870 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 CHI3L1P36222 383 aaPredicted RBP14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 THTPAQ9BU02 230 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 LSM7Q9UK45 103 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 EPS8Q12929 822 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 STX5Q13190 355 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 SDR42E1Q8WUS8 393 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 DISP3Q9P2K9 1392 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 ZBTB7BO15156 539 aaPredicted RBP14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 GTF2E2P29084 291 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 TBCKQ8TEA7 893 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 MEI4A8MW99 385 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 CYP2C19P33261 490 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 SFSWAPQ12872 951 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 ARL6IP4Q66PJ3 421 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 TMEM270Q6UE05 265 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 S100A13Q99584 98 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 PCDHGA4Q9Y5G9 962 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 ALOX15P16050 662 aaPredicted RBP14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 RPS6P62753 249 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 TIGD7Q6NT04 549 aaPredicted RBP14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 MACC1Q6ZN28 852 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 CAMKK2Q96RR4 588 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 APOL4Q9BPW4 351 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 TRIM51Q9BSJ1 452 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 SLC27A3Q5K4L6 730 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 WNK4Q96J92 1243 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 SPON2Q9BUD6 331 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 MLXIPLQ9NP71 852 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 ADGRA2Q96PE1 1338 aa14.59□□□□□ -0.07
CCDC88A-201ENST00000263630 A0A0B4J269 797 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 TRPC5OSA6NMA1 111 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 XPO1O14980 1071 aaKnown RBP14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 CAND2O75155 1236 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 S100A1P23297 94 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 GUCY1A2P33402 732 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 TUBB3Q13509 450 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 CACHD1Q5VU97 1274 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 ZNF304Q9HCX3 659 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 FAM25AB3EWG3 89 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 FAM25CB3EWG5 89 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 FAM25GB3EWG6 89 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 BMP10O95393 424 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 ACADSP16219 412 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 IREB2P48200 963 aaKnown RBP14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 ZCCHC8Q6NZY4 707 aaKnown RBP14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 ERAP2Q6P179 960 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 FAM160B2Q86V87 743 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 COPRSQ9NQ92 184 aa14.58□□□□□ -0.07
CCDC88A-201ENST00000263630 ANO9A1A5B4 782 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 BMP3P12645 472 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 PLCG1P19174 1290 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 DMPKQ09013 629 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 SYDE2Q5VT97 1194 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 RIN3Q8TB24 985 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 YWHAQP27348 245 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 MARK3P27448 753 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 TPI1P60174 286 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 BTBD8Q5XKL5 378 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 VTA1Q9NP79 307 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 ZMYM4Q5VZL5 1548 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 A8MXQ7 604 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 ACADLP28330 430 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 TRIM48Q8IWZ4 208 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 ENO4A6NNW6 628 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 IFNA14P01570 189 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 ARSEP51690 589 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 LRRC41Q15345 812 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 KCTD1Q719H9 257 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 SMYD4Q8IYR2 804 aaPredicted RBP14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 UBE2OQ9C0C9 1292 aaKnown RBP14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 KPNA4O00629 521 aaPredicted RBP14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 SLC1A1P43005 524 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms