RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W YMR230W-AQ3E7B5 62 aa0.93□□□□□ -2.26
CDC39YCR093W HTL1Q9URQ5 78 aa0.93□□□□□ -2.26
CDC39YCR093W RPS24AP0CX31 135 aaKnown RBP0.92□□□□□ -2.26
CDC39YCR093W RPS24BP0CX32 135 aaKnown RBP0.92□□□□□ -2.26
CDC39YCR093W YPK2P18961 677 aa0.92□□□□□ -2.26
CDC39YCR093W RPB4P20433 221 aaPredicted RBP0.92□□□□□ -2.26
CDC39YCR093W IMP3P32899 183 aaPredicted RBP0.92□□□□□ -2.26
CDC39YCR093W TKL2P33315 681 aa0.92□□□□□ -2.26
CDC39YCR093W PRS4P38063 326 aaPredicted RBP0.92□□□□□ -2.26
CDC39YCR093W RCK2P38623 610 aa0.92□□□□□ -2.26
CDC39YCR093W SYF2P53277 215 aaPredicted RBP0.92□□□□□ -2.26
CDC39YCR093W SAY1P53324 424 aa0.92□□□□□ -2.26
CDC39YCR093W SNZ1Q03148 297 aa0.92□□□□□ -2.26
CDC39YCR093W YDR476CQ03362 224 aa0.92□□□□□ -2.26
CDC39YCR093W CDC42P19073 191 aa0.92□□□□□ -2.26
CDC39YCR093W MRPS28P21771 286 aa0.92□□□□□ -2.26
CDC39YCR093W PRP18P33411 251 aaPredicted RBP0.92□□□□□ -2.26
CDC39YCR093W YHL044WP38727 235 aa0.92□□□□□ -2.26
CDC39YCR093W DOG2P38773 246 aa0.92□□□□□ -2.26
CDC39YCR093W DOG1P38774 246 aa0.92□□□□□ -2.26
CDC39YCR093W JLP1Q12358 412 aa0.92□□□□□ -2.26
CDC39YCR093W FLO11P08640 1367 aa0.92□□□□□ -2.26
CDC39YCR093W YLR462WO13556 202 aa0.92□□□□□ -2.26
CDC39YCR093W ATG22P25568 528 aa0.92□□□□□ -2.26
CDC39YCR093W VMA11P32842 164 aa0.92□□□□□ -2.26
CDC39YCR093W YKT6P36015 200 aaKnown RBP0.92□□□□□ -2.26
CDC39YCR093W YEL075CP39972 122 aa0.92□□□□□ -2.26
CDC39YCR093W RTR1P40084 226 aaPredicted RBP0.92□□□□□ -2.26
CDC39YCR093W GCD14P46959 383 aaPredicted RBP0.92□□□□□ -2.26
CDC39YCR093W CPR7P47103 393 aa0.92□□□□□ -2.26
CDC39YCR093W YLR031WQ07978 186 aa0.92□□□□□ -2.26
CDC39YCR093W YAL067W-AQ8TGK6 75 aa0.92□□□□□ -2.26
CDC39YCR093W RPL27AP0C2H6 136 aaKnown RBP0.92□□□□□ -2.26
CDC39YCR093W RPL27BP0C2H7 136 aaKnown RBP0.92□□□□□ -2.26
CDC39YCR093W JEN1P36035 616 aa0.92□□□□□ -2.26
CDC39YCR093W MRX3P38172 270 aa0.92□□□□□ -2.26
CDC39YCR093W KRE9P39005 276 aa0.92□□□□□ -2.26
CDC39YCR093W IBA57P47158 497 aa0.92□□□□□ -2.26
CDC39YCR093W MRH4P53166 561 aa0.92□□□□□ -2.26
CDC39YCR093W ERV29P53337 310 aa0.92□□□□□ -2.26
CDC39YCR093W EBS1Q03466 884 aaKnown RBP0.92□□□□□ -2.26
CDC39YCR093W MGM101P32787 269 aaKnown RBP0.92□□□□□ -2.26
CDC39YCR093W POP8P38208 133 aa0.92□□□□□ -2.26
CDC39YCR093W SUR2P38992 349 aa0.92□□□□□ -2.26
CDC39YCR093W AGX1P43567 385 aa0.92□□□□□ -2.26
CDC39YCR093W PRM8P53174 237 aa0.92□□□□□ -2.26
CDC39YCR093W HST4P53688 370 aa0.92□□□□□ -2.26
CDC39YCR093W SMD1Q02260 146 aaPredicted RBP0.92□□□□□ -2.26
CDC39YCR093W YPL113CQ02961 396 aa0.92□□□□□ -2.26
CDC39YCR093W PLB3Q08108 686 aa0.92□□□□□ -2.26
CDC39YCR093W YOL029CQ08187 201 aa0.92□□□□□ -2.26
CDC39YCR093W KSS1P14681 368 aa0.91□□□□□ -2.26
CDC39YCR093W UTR5P32630 166 aa0.91□□□□□ -2.26
CDC39YCR093W GDH2P33327 1092 aaKnown RBP0.91□□□□□ -2.26
CDC39YCR093W YER189WP40104 122 aa0.91□□□□□ -2.26
CDC39YCR093W GDS1P41913 522 aa0.91□□□□□ -2.26
CDC39YCR093W YCH1P42937 148 aa0.91□□□□□ -2.26
CDC39YCR093W OST2P46964 130 aa0.91□□□□□ -2.26
CDC39YCR093W ZRG17P53735 605 aa0.91□□□□□ -2.26
CDC39YCR093W COX20Q04935 205 aa0.91□□□□□ -2.26
CDC39YCR093W IES4Q08561 116 aa0.91□□□□□ -2.26
CDC39YCR093W DUR1,2P32528 1835 aaKnown RBP0.91□□□□□ -2.26
CDC39YCR093W RNP1P32385 249 aa0.91□□□□□ -2.26
CDC39YCR093W ECM14P38836 430 aa0.91□□□□□ -2.26
CDC39YCR093W SCC4P40090 624 aa0.91□□□□□ -2.26
CDC39YCR093W AAH1P53909 347 aa0.91□□□□□ -2.26
CDC39YCR093W MAK3Q03503 176 aa0.91□□□□□ -2.26
CDC39YCR093W YDR248CQ03786 193 aa0.91□□□□□ -2.26
CDC39YCR093W PRR2Q12310 699 aa0.91□□□□□ -2.26
CDC39YCR093W YOR012WQ12351 137 aa0.91□□□□□ -2.26
CDC39YCR093W YDL085C-AQ3E7B7 68 aaKnown RBP0.91□□□□□ -2.26
CDC39YCR093W RSA4P25382 515 aaKnown RBP0.91□□□□□ -2.26
CDC39YCR093W RME1P32338 300 aaKnown RBP0.91□□□□□ -2.26
CDC39YCR093W YBR063CP38083 404 aa0.91□□□□□ -2.26
CDC39YCR093W YER085CP40058 173 aa0.91□□□□□ -2.26
CDC39YCR093W ARC15P40518 154 aaRIP-Chip data0.91□□□□□ -2.26not detected
CDC39YCR093W MSS2P40990 351 aa0.91□□□□□ -2.26
CDC39YCR093W ABM1P47146 123 aa0.91□□□□□ -2.26
CDC39YCR093W VBA1Q04301 562 aa0.91□□□□□ -2.26
CDC39YCR093W SPG4Q04438 115 aa0.91□□□□□ -2.26
CDC39YCR093W RPN6Q12377 434 aa0.91□□□□□ -2.26
CDC39YCR093W PRM7Q12459 698 aa0.91□□□□□ -2.26
CDC39YCR093W VPS13Q07878 3144 aa0.91□□□□□ -2.26
CDC39YCR093W MDN1Q12019 4910 aaKnown RBP0.91□□□□□ -2.26
CDC39YCR093W MSF1P08425 469 aa0.91□□□□□ -2.26
CDC39YCR093W PBN1P25580 416 aa0.91□□□□□ -2.26
CDC39YCR093W CSG2P35206 410 aa0.91□□□□□ -2.26
CDC39YCR093W YJL144WP47009 104 aa0.91□□□□□ -2.26
CDC39YCR093W RPN14P53196 417 aa0.91□□□□□ -2.26
CDC39YCR093W TIM13P53299 105 aa0.91□□□□□ -2.26
CDC39YCR093W TMA20P89886 181 aaPredicted RBP0.91□□□□□ -2.26
CDC39YCR093W SMT3Q12306 101 aaKnown RBP0.91□□□□□ -2.26
CDC39YCR093W TIM22Q12328 207 aa0.91□□□□□ -2.26
CDC39YCR093W BCY1P07278 416 aaKnown RBP0.91□□□□□ -2.26
CDC39YCR093W DOA4P32571 926 aa0.91□□□□□ -2.26
CDC39YCR093W SNC2P33328 115 aa0.91□□□□□ -2.26
CDC39YCR093W YBR137WP38276 179 aa0.91□□□□□ -2.26
CDC39YCR093W SIP3P38717 1229 aa0.91□□□□□ -2.26
CDC39YCR093W FAR8Q05040 523 aa0.91□□□□□ -2.26
CDC39YCR093W YOR114WQ12219 294 aa0.91□□□□□ -2.26
Retrieved 100 of 5,963 RNA–protein pairs in 11.4 ms