RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 CASTOR2A6NHX0 329 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 LACTBL1A8MY62 500 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 TMEM189-UBE2V1I3L0A0 370 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 IL18RAPO95256 599 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 DCLRE1AQ6PJP8 1040 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 TMC7Q7Z402 723 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 NT5DC4Q86YG4 428 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 NELFCDQ8IXH7 590 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 VPS52Q8N1B4 723 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 GPD1LQ8N335 351 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 SMARCE1Q969G3 411 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 TCF25Q9BQ70 676 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 CBWD1Q9BRT8 395 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 AGPAT3Q9NRZ7 376 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 ADAM28Q9UKQ2 775 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 UBQLN1Q9UMX0 589 aaKnown RBP28.01■■■□□ 2.07
TRIM28-204ENST00000594806 SSX2IPQ9Y2D8 614 aa28.01■■■□□ 2.07
TRIM28-204ENST00000594806 ERVFC1P60507 584 aa28■■■□□ 2.07
TRIM28-204ENST00000594806 ELAVL2Q12926 359 aaKnown RBP28■■■□□ 2.07
TRIM28-204ENST00000594806 SMC1AQ14683 1233 aaKnown RBP28■■■□□ 2.07
TRIM28-204ENST00000594806 ZBTB6Q15916 424 aa28■■■□□ 2.07
TRIM28-204ENST00000594806 CRELD2Q6UXH1 353 aaPredicted RBP28■■■□□ 2.07
TRIM28-204ENST00000594806 TMEM174Q8WUU8 243 aa28■■■□□ 2.07
TRIM28-204ENST00000594806 BCL7CQ8WUZ0 217 aaPredicted RBP28■■■□□ 2.07
TRIM28-204ENST00000594806 KIF12Q96FN5 646 aa28■■■□□ 2.07
TRIM28-204ENST00000594806 FAM213AQ9BRX8 229 aa28■■■□□ 2.07
TRIM28-204ENST00000594806 ZBP1Q9H171 429 aa28■■■□□ 2.07
TRIM28-204ENST00000594806 ENTPD7Q9NQZ7 604 aa28■■■□□ 2.07
TRIM28-204ENST00000594806 C2CD2Q9Y426 696 aa28■■■□□ 2.07
TRIM28-204ENST00000594806 IRAK3Q9Y616 596 aa28■■■□□ 2.07
TRIM28-204ENST00000594806 ANK1P16157 1881 aa28■■■□□ 2.07
TRIM28-204ENST00000594806 GOLGA6L22H0YM25 854 aa27.99■■■□□ 2.07
TRIM28-204ENST00000594806 TADA2AO75478 443 aa27.99■■■□□ 2.07
TRIM28-204ENST00000594806 EFEMP2O95967 443 aa27.99■■■□□ 2.07
TRIM28-204ENST00000594806 SOD2P04179 222 aa27.99■■■□□ 2.07
TRIM28-204ENST00000594806 CTSAP10619 480 aa27.99■■■□□ 2.07
TRIM28-204ENST00000594806 CCDC85BQ15834 202 aaPredicted RBP27.99■■■□□ 2.07
TRIM28-204ENST00000594806 UPP1Q16831 310 aa27.99■■■□□ 2.07
TRIM28-204ENST00000594806 GPR65Q8IYL9 337 aa27.99■■■□□ 2.07
TRIM28-204ENST00000594806 RNF168Q8IYW5 571 aaPredicted RBP27.99■■■□□ 2.07
TRIM28-204ENST00000594806 GUF1Q8N442 669 aaKnown RBP27.99■■■□□ 2.07
TRIM28-204ENST00000594806 PCIF1Q9H4Z3 704 aa27.99■■■□□ 2.07
TRIM28-204ENST00000594806 HSPBP1Q9NZL4 362 aa27.99■■■□□ 2.07
TRIM28-204ENST00000594806 PCDHA5Q9Y5H7 936 aa27.99■■■□□ 2.07
TRIM28-204ENST00000594806 PDXKO00764 312 aa27.98■■■□□ 2.07
TRIM28-204ENST00000594806 IRS1P35568 1242 aa27.98■■■□□ 2.07
TRIM28-204ENST00000594806 TCEAL5Q5H9L2 206 aa27.98■■■□□ 2.07
TRIM28-204ENST00000594806 FUT10Q6P4F1 479 aa27.98■■■□□ 2.07
TRIM28-204ENST00000594806 BRSK2Q8IWQ3 736 aa27.98■■■□□ 2.07
TRIM28-204ENST00000594806 PPM1EQ8WY54 764 aa27.98■■■□□ 2.07
TRIM28-204ENST00000594806 FAM212AQ96EL1 285 aa27.98■■■□□ 2.07
TRIM28-204ENST00000594806 SAAL1Q96ER3 474 aa27.98■■■□□ 2.07
TRIM28-204ENST00000594806 FBXL18Q96ME1 805 aa27.98■■■□□ 2.07
TRIM28-204ENST00000594806 CDCA3Q99618 268 aaPredicted RBP27.98■■■□□ 2.07
TRIM28-204ENST00000594806 HERC2P3Q9BVR0 1158 aa27.98■■■□□ 2.07
TRIM28-204ENST00000594806 SF3B1O75533 1304 aaKnown RBP eCLIP27.97■■■□□ 2.073e-6■■■■□ 26.1
TRIM28-204ENST00000594806 ZNF233A6NK53 670 aa27.97■■■□□ 2.07
TRIM28-204ENST00000594806 LRPAP1P30533 357 aa27.97■■■□□ 2.07
TRIM28-204ENST00000594806 CLCNKBP51801 687 aa27.97■■■□□ 2.07
TRIM28-204ENST00000594806 SOX4Q06945 474 aaPredicted RBP27.97■■■□□ 2.07
TRIM28-204ENST00000594806 MYBPC2Q14324 1141 aa27.97■■■□□ 2.07
TRIM28-204ENST00000594806 SURF1Q15526 300 aa27.97■■■□□ 2.07
TRIM28-204ENST00000594806 COBLL1Q53SF7 1204 aa27.97■■■□□ 2.07
TRIM28-204ENST00000594806 MRPL43Q8N983 215 aaKnown RBP27.97■■■□□ 2.07
TRIM28-204ENST00000594806 PAAF1Q9BRP4 392 aa27.97■■■□□ 2.07
TRIM28-204ENST00000594806 KCTD10Q9H3F6 313 aa27.97■■■□□ 2.07
TRIM28-204ENST00000594806 TRAPPC3O43617 180 aa27.96■■■□□ 2.07
TRIM28-204ENST00000594806 B3GAT3O94766 335 aa27.96■■■□□ 2.07
TRIM28-204ENST00000594806 TMEM132DQ14C87 1099 aa27.96■■■□□ 2.07
TRIM28-204ENST00000594806 ZNF658Q5TYW1 1059 aaPredicted RBP27.96■■■□□ 2.07
TRIM28-204ENST00000594806 PLPP4Q5VZY2 271 aa27.96■■■□□ 2.07
TRIM28-204ENST00000594806 SLC9A9Q8IVB4 645 aa27.96■■■□□ 2.07
TRIM28-204ENST00000594806 XXYLT1Q8NBI6 393 aa27.96■■■□□ 2.07
TRIM28-204ENST00000594806 BEST2Q8NFU1 509 aa27.96■■■□□ 2.07
TRIM28-204ENST00000594806 VN1R3Q9BXE9 311 aa27.96■■■□□ 2.07
TRIM28-204ENST00000594806 RBAKQ9NYW8 714 aaPredicted RBP27.96■■■□□ 2.07
TRIM28-204ENST00000594806 COG5Q9UP83 839 aa27.96■■■□□ 2.07
TRIM28-204ENST00000594806 PODXLO00592 558 aa27.95■■■□□ 2.06
TRIM28-204ENST00000594806 KIF4AO95239 1232 aa27.95■■■□□ 2.06
TRIM28-204ENST00000594806 CXCL14O95715 111 aa27.95■■■□□ 2.06
TRIM28-204ENST00000594806 PAX3P23760 479 aa27.95■■■□□ 2.06
TRIM28-204ENST00000594806 USP41Q3LFD5 358 aa27.95■■■□□ 2.06
TRIM28-204ENST00000594806 SPATA1Q5VX52 437 aa27.95■■■□□ 2.06
TRIM28-204ENST00000594806 JADE1Q6IE81 842 aa27.95■■■□□ 2.06
TRIM28-204ENST00000594806 C18orf25Q96B23 403 aaPredicted RBP27.95■■■□□ 2.06
TRIM28-204ENST00000594806 TLE6Q9H808 572 aa27.95■■■□□ 2.06
TRIM28-204ENST00000594806 MRPL17Q9NRX2 175 aaKnown RBP27.95■■■□□ 2.06
TRIM28-204ENST00000594806 CHST7Q9NS84 486 aa27.95■■■□□ 2.06
TRIM28-204ENST00000594806 LMBRD1Q9NUN5 540 aa27.95■■■□□ 2.06
TRIM28-204ENST00000594806 TRAF3IP3Q9Y228 551 aa27.95■■■□□ 2.06
TRIM28-204ENST00000594806 GOLGA8IPA6NC78 632 aa27.94■■■□□ 2.06
TRIM28-204ENST00000594806 C2orf71A6NGG8 1288 aa27.94■■■□□ 2.06
TRIM28-204ENST00000594806 GOLGA8JA6NMD2 632 aa27.94■■■□□ 2.06
TRIM28-204ENST00000594806 CLIC2O15247 247 aa27.94■■■□□ 2.06
TRIM28-204ENST00000594806 CALUO43852 315 aaPredicted RBP27.94■■■□□ 2.06
TRIM28-204ENST00000594806 URODP06132 367 aa27.94■■■□□ 2.06
TRIM28-204ENST00000594806 COL19A1Q14993 1142 aa27.94■■■□□ 2.06
TRIM28-204ENST00000594806 SKIV2LQ15477 1246 aaKnown RBP27.94■■■□□ 2.06
TRIM28-204ENST00000594806 CACTINQ8WUQ7 758 aaKnown RBP27.94■■■□□ 2.06
TRIM28-204ENST00000594806 GPR62Q9BZJ7 368 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms