RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 MIOSQ9NXC5 875 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 ARMCX3Q9UH62 379 aaPredicted RBP12.58□□□□□ -0.4
YBX3-213ENST00000542641 INSL6Q9Y581 213 aa12.58□□□□□ -0.4
YBX3-213ENST00000542641 TTC3P53804 2025 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 PTGESO14684 152 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 IKBKBO14920 756 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 INPPL1O15357 1258 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 DLATP10515 647 aaKnown RBP12.57□□□□□ -0.4
YBX3-213ENST00000542641 KCNE1P15382 129 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 TNNI1P19237 187 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 VAMP7P51809 220 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 RABGGTBP53611 331 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 WNT7BP56706 349 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 HTRA4P83105 476 aaPredicted RBP12.57□□□□□ -0.4
YBX3-213ENST00000542641 RNASELQ05823 741 aaKnown RBP12.57□□□□□ -0.4
YBX3-213ENST00000542641 BTG3Q14201 252 aaPredicted RBP12.57□□□□□ -0.4
YBX3-213ENST00000542641 TMEM132DQ14C87 1099 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 PSMD6Q15008 389 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 HSP90AA4PQ58FG1 418 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 FAM109BQ6ICB4 259 aaPredicted RBP12.57□□□□□ -0.4
YBX3-213ENST00000542641 JADE1Q6IE81 842 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 FRMD5Q7Z6J6 570 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 USP37Q86T82 979 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 FAM114A1Q8IWE2 563 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 DHX40Q8IX18 779 aaKnown RBP12.57□□□□□ -0.4
YBX3-213ENST00000542641 PARD3BQ8TEW8 1205 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 ZNF689Q96CS4 500 aaPredicted RBP12.57□□□□□ -0.4
YBX3-213ENST00000542641 ZMAT2Q96NC0 199 aaKnown RBP12.57□□□□□ -0.4
YBX3-213ENST00000542641 TSPAN18Q96SJ8 248 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 POP1Q99575 1024 aaKnown RBP12.57□□□□□ -0.4
YBX3-213ENST00000542641 MRPL9Q9BYD2 267 aaKnown RBP12.57□□□□□ -0.4
YBX3-213ENST00000542641 PRO3102Q9H379 93 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 CBX8Q9HC52 389 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 SAMSN1Q9NSI8 373 aaKnown RBP12.57□□□□□ -0.4
YBX3-213ENST00000542641 SLC38A7Q9NVC3 462 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 TBC1D13Q9NVG8 400 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 MAGEC2Q9UBF1 373 aaPredicted RBP12.57□□□□□ -0.4
YBX3-213ENST00000542641 DERAQ9Y315 318 aa12.57□□□□□ -0.4
YBX3-213ENST00000542641 CEP290O15078 2479 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.56□□□□□ -0.4
YBX3-213ENST00000542641 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.56□□□□□ -0.4
YBX3-213ENST00000542641 GRXCR1A8MXD5 290 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 NFICP08651 508 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 TFAMQ00059 246 aaKnown RBP12.56□□□□□ -0.4
YBX3-213ENST00000542641 BFSP1Q12934 665 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 GRIK3Q13003 919 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 NCAPHQ15003 741 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 IQCB1Q15051 598 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 TCERG1LQ5VWI1 586 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 NT5DC4Q86YG4 428 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 IRF2BP1Q8IU81 584 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 WDR49Q8IV35 697 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 CMTR2Q8IYT2 770 aaKnown RBP12.56□□□□□ -0.4
YBX3-213ENST00000542641 LRRC43Q8N309 656 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 FAM200AQ8TCP9 573 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 TMC2Q8TDI7 906 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 CACTINQ8WUQ7 758 aaKnown RBP12.56□□□□□ -0.4
YBX3-213ENST00000542641 SLC39A7Q92504 469 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 BORCS6Q96GS4 357 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 CNOT6LQ96LI5 555 aaKnown RBP12.56□□□□□ -0.4
YBX3-213ENST00000542641 FAM193BQ96PV7 902 aaPredicted RBP12.56□□□□□ -0.4
YBX3-213ENST00000542641 PPP1R10Q96QC0 940 aaKnown RBP12.56□□□□□ -0.4
YBX3-213ENST00000542641 RC3H2Q9HBD1 1191 aaKnown RBP12.56□□□□□ -0.4
YBX3-213ENST00000542641 PLAGL2Q9UPG8 496 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 C2CD2Q9Y426 696 aa12.56□□□□□ -0.4
YBX3-213ENST00000542641 LRRIQ3A6PVS8 624 aaPredicted RBP12.55□□□□□ -0.4
YBX3-213ENST00000542641 KCNJ18B7U540 433 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 GOLGA6L19H0YKK7 550 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 XPOTO43592 962 aaKnown RBP12.55□□□□□ -0.4
YBX3-213ENST00000542641 DDHD2O94830 711 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 TMEM191BP0C7N4 346 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 MTIF2P46199 727 aaKnown RBP12.55□□□□□ -0.4
YBX3-213ENST00000542641 MARSP56192 900 aaKnown RBP12.55□□□□□ -0.4
YBX3-213ENST00000542641 TPM4P67936 248 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 DLG4P78352 724 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 CLDN10P78369 228 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 ENPEPQ07075 957 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 KCNJ12Q14500 433 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 ZBTB6Q15916 424 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 DUOXA2Q1HG44 320 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 DCAF17Q5H9S7 520 aaPredicted RBP12.55□□□□□ -0.4
YBX3-213ENST00000542641 SPOUT1Q5T280 376 aaKnown RBP12.55□□□□□ -0.4
YBX3-213ENST00000542641 IER5LQ5T953 404 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 PRPF38BQ5VTL8 546 aaKnown RBP12.55□□□□□ -0.4
YBX3-213ENST00000542641 CDKAL1Q5VV42 579 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 LMBRD2Q68DH5 695 aaPredicted RBP12.55□□□□□ -0.4
YBX3-213ENST00000542641 LUZP1Q86V48 1076 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 ZNF280BQ86YH2 543 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 EFCAB13Q8IY85 973 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 FIBCD1Q8N539 461 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 BEST2Q8NFU1 509 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 PLEKHO2Q8TD55 490 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 C18orf25Q96B23 403 aaPredicted RBP12.55□□□□□ -0.4
YBX3-213ENST00000542641 ANKRD36BP1Q96IX9 119 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 CGRRF1Q99675 332 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 INTS13Q9NVM9 706 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 UBQLN1Q9UMX0 589 aaKnown RBP12.55□□□□□ -0.4
YBX3-213ENST00000542641 COLQQ9Y215 455 aaPredicted RBP12.55□□□□□ -0.4
YBX3-213ENST00000542641 PCDHA11Q9Y5I1 949 aa12.55□□□□□ -0.4
YBX3-213ENST00000542641 PDE4DIPQ5VU43 2346 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms