RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 CRIM1Q9NZV1 1036 aa6.18□□□□□ -1.42
PTPN4-210ENST00000485247 PADI3Q9ULW8 664 aa6.18□□□□□ -1.42
PTPN4-210ENST00000485247 SMG5Q9UPR3 1016 aaKnown RBP6.18□□□□□ -1.42
PTPN4-210ENST00000485247 LZTS1Q9Y250 596 aa6.18□□□□□ -1.42
PTPN4-210ENST00000485247 PCDHB7Q9Y5E2 793 aa6.18□□□□□ -1.42
PTPN4-210ENST00000485247 CDY2AQ9Y6F7 541 aa6.18□□□□□ -1.42
PTPN4-210ENST00000485247 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.18□□□□□ -1.42
PTPN4-210ENST00000485247 OAS3Q9Y6K5 1087 aaKnown RBP6.18□□□□□ -1.42
PTPN4-210ENST00000485247 CCDC171Q6TFL3 1326 aa6.18□□□□□ -1.42
PTPN4-210ENST00000485247 CACNA1IQ9P0X4 2223 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 C2orf71A6NGG8 1288 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 PATL2C9JE40 543 aaKnown RBP6.17□□□□□ -1.42
PTPN4-210ENST00000485247 RANBP6O60518 1105 aaKnown RBP6.17□□□□□ -1.42
PTPN4-210ENST00000485247 LRRN2O75325 713 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 CFBP00751 764 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 C1QTNF9P0C862 333 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 PDHBP11177 359 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 FOSL1P15407 271 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 LAG3P18627 525 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 GNAT2P19087 354 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 PBX3P40426 434 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 GP2P55259 537 aaKnown RBP6.17□□□□□ -1.42
PTPN4-210ENST00000485247 CSTF1Q05048 431 aaKnown RBP6.17□□□□□ -1.42
PTPN4-210ENST00000485247 PPARAQ07869 468 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 TMEM62Q0P6H9 643 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 MAP7Q14244 749 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 SMC1AQ14683 1233 aaKnown RBP6.17□□□□□ -1.42
PTPN4-210ENST00000485247 HSP90AB4PQ58FF6 505 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 UTP14CQ5TAP6 766 aaKnown RBP6.17□□□□□ -1.42
PTPN4-210ENST00000485247 N4BP2L1Q5TBK1 243 aaPredicted RBP6.17□□□□□ -1.42
PTPN4-210ENST00000485247 CEP85Q6P2H3 762 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 KCNV1Q6PIU1 500 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 CCDC149Q6ZUS6 474 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 MCF2L2Q86YR7 1114 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 SULF2Q8IWU5 870 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 TRMT2AQ8IZ69 625 aaKnown RBP6.17□□□□□ -1.42
PTPN4-210ENST00000485247 MRPL43Q8N983 215 aaKnown RBP6.17□□□□□ -1.42
PTPN4-210ENST00000485247 NETO1Q8TDF5 533 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 FBF1Q8TES7 1133 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 FANCD2OSQ96PS1 177 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 GPR20Q99678 358 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 TMEM47Q9BQJ4 181 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 FAM49AQ9H0Q0 323 aaPredicted RBP6.17□□□□□ -1.42
PTPN4-210ENST00000485247 NAPBQ9H115 298 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 TMX1Q9H3N1 280 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 CWH43Q9H720 699 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 KRT82Q9NSB4 513 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 SPATA6Q9NWH7 488 aaPredicted RBP6.17□□□□□ -1.42
PTPN4-210ENST00000485247 IGSF9Q9P2J2 1179 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 GMEB2Q9UKD1 530 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 ZNF215Q9UL58 517 aaPredicted RBP6.17□□□□□ -1.42
PTPN4-210ENST00000485247 TELO2Q9Y4R8 837 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 PCDHGA2Q9Y5H1 932 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 NRCAMQ92823 1304 aa6.17□□□□□ -1.42
PTPN4-210ENST00000485247 SETXQ7Z333 2677 aaKnown RBP6.16□□□□□ -1.42
PTPN4-210ENST00000485247 M0R2C6 588 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 LAMTOR5O43504 91 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 P4HBP07237 508 aaKnown RBP6.16□□□□□ -1.42
PTPN4-210ENST00000485247 GOLGA8HP0CJ92 632 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 TGFB3P10600 412 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 HSPD1P10809 573 aaKnown RBP6.16□□□□□ -1.42
PTPN4-210ENST00000485247 FGFR1P11362 822 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 TOP1P11387 765 aaKnown RBP6.16□□□□□ -1.42
PTPN4-210ENST00000485247 SRFP11831 508 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 EPCAMP16422 314 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 NOVP48745 357 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 SARSP49591 514 aaKnown RBP6.16□□□□□ -1.42
PTPN4-210ENST00000485247 MRPS6P82932 125 aaKnown RBP6.16□□□□□ -1.42
PTPN4-210ENST00000485247 SHC2P98077 582 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 SP4Q02446 784 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 ID3Q02535 119 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 KRT17Q04695 432 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 ZNF543Q08ER8 600 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 PAK2Q13177 524 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 NONOQ15233 471 aaKnown RBP eCLIP6.16□□□□□ -1.42
PTPN4-210ENST00000485247 CDC37Q16543 378 aaPredicted RBP6.16□□□□□ -1.42
PTPN4-210ENST00000485247 LPAL2Q16609 132 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 CPSF6Q16630 551 aaKnown RBP eCLIP6.16□□□□□ -1.42
PTPN4-210ENST00000485247 ZNF528Q3MIS6 628 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 KCNT2Q6UVM3 1135 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 LRSAM1Q6UWE0 723 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 NFXL1Q6ZNB6 911 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 CYFIP1Q7L576 1253 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 CABP7Q86V35 215 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 SLC44A3Q8N4M1 653 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 TMEM87AQ8NBN3 555 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 PJA1Q8NG27 643 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 GIMAP7Q8NHV1 300 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 IL31RAQ8NI17 732 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 APPBP2Q92624 585 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 ZBTB10Q96DT7 871 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 KIF1BPQ96EK5 621 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 BORCS6Q96GS4 357 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 PDCD2LQ9BRP1 358 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 NACAP1Q9BZK3 213 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 UBA5Q9GZZ9 404 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 EPC1Q9H2F5 836 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 ARHGEF3Q9NR81 526 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 PPP4R2Q9NY27 417 aa6.16□□□□□ -1.42
PTPN4-210ENST00000485247 TUBE1Q9UJT0 475 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms