RNA–Protein interactions for RNA: ENST00000478061.5

RBM28-204, Transcript of RNA binding motif protein 28, human

TSL 3

Gene RBM28, Length 932 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM28-204	ENST00000478061	EXOC3	O60645	756 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	IL18RAP	O95256	599 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	OR1G1	P47890	313 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	PLCB3	Q01970	1234 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	ADGRE1	Q14246	886 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	MYBPC2	Q14324	1141 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	SNRNP35	Q16560	246 aa	Known RBP	13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	NFIL3	Q16649	462 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	JADE1	Q6IE81	842 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	CENPP	Q6IPU0	288 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	RBM43	Q6ZSC3	357 aa	Known RBP	13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	SPPL3	Q8TCT6	385 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	RABGGTA	Q92696	567 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	KIF12	Q96FN5	646 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	IGSF21	Q96ID5	467 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	TSPAN18	Q96SJ8	248 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	CDX2	Q99626	313 aa	Predicted RBP	13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	PAAF1	Q9BRP4	392 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	GOLGA2P5	Q9HBQ8	144 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	ALG13	Q9NP73	1137 aa	Known RBP	13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	PRG3	Q9Y2Y8	225 aa	Predicted RBP	13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	DERA	Q9Y315	318 aa		13.9	□□□□□ -0.18
RBM28-204	ENST00000478061	PSMA7	O14818	248 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	NFIC	P08651	508 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	DNAJB1	P25685	340 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	PPP1R2	P41236	205 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	PMS1	P54277	932 aa	Known RBP	13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	STIM1	Q13586	685 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	TMEM132D	Q14C87	1099 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	EDRF1	Q3B7T1	1238 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	ANKRD40	Q6AI12	368 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	KLHL10	Q6JEL2	608 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	EFCAB13	Q8IY85	973 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	TMEM130	Q8N3G9	435 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	RDH13	Q8NBN7	331 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	MYLIP	Q8WY64	445 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	DHTKD1	Q96HY7	919 aa	Predicted RBP	13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	COLEC11	Q9BWP8	271 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	PDE11A	Q9HCR9	933 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	MARCH5	Q9NX47	278 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	TUBGCP4	Q9UGJ1	667 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	UBQLN1	Q9UMX0	589 aa	Known RBP	13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	C2CD2	Q9Y426	696 aa		13.89	□□□□□ -0.19
RBM28-204	ENST00000478061	CIT	O14578	2027 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	KIAA1671	Q9BY89	1806 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	CYP3A5	P20815	502 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	NR2F2	P24468	414 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	IGFBP6	P24592	240 aa	Predicted RBP	13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	CCNE1	P24864	410 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	RPL13	P26373	211 aa	Known RBP	13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	CASP4	P49662	377 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	CLCNKB	P51801	687 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	GUCY2F	P51841	1108 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	KRT17	Q04695	432 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	UBE3A	Q05086	875 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	CYP24A1	Q07973	514 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	UPP1	Q16831	310 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	CCDC183	Q5T5S1	534 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	SPATA1	Q5VX52	437 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	POF1B	Q8WVV4	589 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	NELFB	Q8WX92	580 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	DDX27	Q96GQ7	796 aa	Known RBP	13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	TMEM169	Q96HH4	297 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	MFSD14A	Q96MC6	490 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	UROC1	Q96N76	676 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	TSG101	Q99816	390 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	VN1R3	Q9BXE9	311 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	TMEM63C	Q9P1W3	806 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	LZTS1	Q9Y250	596 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	TRIP11	Q15643	1979 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	RALGAPA2	Q2PPJ7	1873 aa		13.88	□□□□□ -0.19
RBM28-204	ENST00000478061	NLRC5	Q86WI3	1866 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	TRIM49B	A6NDI0	452 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	TULP1	O00294	542 aa	Predicted RBP	13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	PODXL	O00592	558 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	XPOT	O43592	962 aa	Known RBP	13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	KIF4A	O95239	1232 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	EFEMP2	O95967	443 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	PTMS	P20962	102 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	RPL9	P32969	192 aa	Known RBP	13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	LRRC63	Q05C16	580 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	ADAM9	Q13443	819 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	CAMK1	Q14012	370 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	PSMD6	Q15008	389 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	CEP135	Q66GS9	1140 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	TTI2	Q6NXR4	508 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	DCLRE1A	Q6PJP8	1040 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	CD300LG	Q6UXG3	332 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	DDX53	Q86TM3	631 aa	Known RBP	13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	NT5DC4	Q86YG4	428 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	ZC3H3	Q8IXZ2	948 aa	Known RBP	13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	MLKL	Q8NB16	471 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	BEST2	Q8NFU1	509 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	PLEKHO2	Q8TD55	490 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	MRPL38	Q96DV4	380 aa	Known RBP	13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	EEF2KMT	Q96G04	330 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	FAM84A	Q96KN4	292 aa		13.87	□□□□□ -0.19
RBM28-204	ENST00000478061	GAS2L1	Q99501	681 aa	Predicted RBP	13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms