RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 PPP1R2P3Q6NXS1 205 aa14□□□□□ -0.17
USP40-208ENST00000450966 FOXP1Q9H334 677 aaPredicted RBP14□□□□□ -0.17
USP40-208ENST00000450966 PCDHA1Q9Y5I3 950 aa14□□□□□ -0.17
USP40-208ENST00000450966 TRIM43BA6NCK2 446 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 PDIA3P30101 505 aaKnown RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 KLHL12Q53G59 568 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 USP17L2Q6R6M4 530 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 ZBTB8BQ8NAP8 495 aaPredicted RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 ARHGEF1Q92888 912 aaKnown RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 MAP4K1Q92918 833 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 TMEM120BA0PK00 339 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 TBC1D4O60343 1298 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 ECE2O60344 883 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 CYP19A1P11511 503 aaPredicted RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 AOC3Q16853 763 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 FAM182BQ5T319 152 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 ARMC3Q5W041 872 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 ARL8AQ96BM9 186 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 TRABDQ9H4I3 376 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 EPS8L2Q9H6S3 715 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 METTL5Q9NRN9 209 aaKnown RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 AIPL1Q9NZN9 384 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 COL4A3BPQ9Y5P4 624 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 NDUFB9Q9Y6M9 179 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 ATP8B3O60423 1300 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 A0A1W2PQC6 194 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 MCL1Q07820 350 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 DMP1Q13316 513 aaPredicted RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 ADAM9Q13443 819 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 CDC37Q16543 378 aaPredicted RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 ARMCX4Q5H9R4 360 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 PPP6R3Q5H9R7 873 aaPredicted RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 ZMYM1Q5SVZ6 1142 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 ALKBH5Q6P6C2 394 aaKnown RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 RBM46Q8TBY0 533 aaKnown RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 C1orf50Q9BV19 199 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 TRIM64CA6NLI5 447 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 SNTNA6NMZ2 147 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 K7ENM7 598 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 STAM2O75886 525 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 JAK1P23458 1154 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 POLGP54098 1239 aaPredicted RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 BLMHQ13867 455 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 SYDE2Q5VT97 1194 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 MFSD14CQ5VZR4 134 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 SCAIQ8N9R8 606 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 GIPC3Q8TF64 312 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 MTIF3Q9H2K0 278 aaKnown RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 CLEC4MQ9H2X3 399 aaPredicted RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 GINM1Q9NU53 330 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 HAO1Q9UJM8 370 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 CPS1P31327 1500 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 ABCC12Q96J65 1359 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 SPATA31A5Q5VU36 1347 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 SPATA31A7Q8IWB4 1347 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 TBC1D12O60347 775 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 POLR2BP30876 1174 aaKnown RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 PEX5P50542 639 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 OCRLQ01968 901 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 SCRN3Q0VDG4 424 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 STYK1Q6J9G0 422 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 RAPH1Q70E73 1250 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 RIBC1Q8N443 379 aaPredicted RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 EAF2Q96CJ1 260 aaPredicted RBP13.99□□□□□ -0.17
USP40-208ENST00000450966 PCDHGA3Q9Y5H0 932 aa13.99□□□□□ -0.17
USP40-208ENST00000450966 ITIH6Q6UXX5 1313 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 USP17L5A8MUK1 530 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 OR52Z1P0C646 297 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 KITP10721 976 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 TBC1D10BQ4KMP7 808 aaPredicted RBP13.98□□□□□ -0.17
USP40-208ENST00000450966 BSPRYQ5W0U4 402 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 CYGBQ8WWM9 190 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 CAVIN3Q969G5 261 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 NDST4Q9H3R1 872 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 RRN3Q9NYV6 651 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 CEP170BQ9Y4F5 1589 aaPredicted RBP13.98□□□□□ -0.17
USP40-208ENST00000450966 FRMPD2Q68DX3 1309 aaPredicted RBP13.98□□□□□ -0.17
USP40-208ENST00000450966 C1orf232A0A0U1RR37 186 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 RPS12P25398 132 aaKnown RBP13.98□□□□□ -0.17
USP40-208ENST00000450966 MAPK4P31152 587 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 METTL23Q86XA0 190 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 FAM178BQ8IXR5 827 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 LRRC47Q8N1G4 583 aaKnown RBP13.98□□□□□ -0.17
USP40-208ENST00000450966 LBHD1Q9BQE6 289 aaPredicted RBP13.98□□□□□ -0.17
USP40-208ENST00000450966 DISC1Q9NRI5 854 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 KCNH4Q9UQ05 1017 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 TRIM24O15164 1050 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 ABL1P00519 1130 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 PYGLP06737 847 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 TTKP33981 857 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 ALDH5A1P51649 535 aaPredicted RBP13.98□□□□□ -0.17
USP40-208ENST00000450966 RESP18Q5W5W9 173 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 CCDC149Q6ZUS6 474 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 SCUBE1Q8IWY4 988 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 CCDC127Q96BQ5 260 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 HACL1Q9UJ83 578 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 PTPRUQ92729 1446 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 HSPD1P10809 573 aaKnown RBP13.98□□□□□ -0.17
USP40-208ENST00000450966 ADD2P35612 726 aa13.98□□□□□ -0.17
USP40-208ENST00000450966 AKR1D1P51857 326 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms