RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 Q3C1V9 767 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 ALKBH8Q96BT7 664 aaKnown RBP12.15□□□□□ -0.46
VPS39-201ENST00000318006 PI4K2BG5E9Z4 385 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 H3BRJ5 948 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 ZBTB7AO95365 584 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 ITIH2P19823 946 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 RFX1P22670 979 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 VAMP7P51809 220 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 CLEC10AQ8IUN9 316 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 ATL2Q8NHH9 583 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 ANKRD27Q96NW4 1050 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 PPP1R16BQ96T49 567 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 AGPAT5Q9NUQ2 364 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 SMARCAL1Q9NZC9 954 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 GABBR1Q9UBS5 961 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 MAGED2Q9UNF1 606 aaPredicted RBP12.15□□□□□ -0.46
VPS39-201ENST00000318006 ADCY3O60266 1144 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 ENTPD3O75355 529 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 PDHBP11177 359 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 ALDH18A1P54886 795 aaKnown RBP12.15□□□□□ -0.46
VPS39-201ENST00000318006 ZNF667Q5HYK9 610 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 LRRC34Q8IZ02 419 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 SLC13A1Q9BZW2 595 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 KDM4CQ9H3R0 1056 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 PPCSQ9HAB8 311 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 PKD2L2Q9NZM6 624 aa12.15□□□□□ -0.46
VPS39-201ENST00000318006 MTO1Q9Y2Z2 717 aaKnown RBP12.15□□□□□ -0.46
VPS39-201ENST00000318006 GPR75-ASB3A0A0A6YYF3 556 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 IL10P22301 178 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 HSD17B3P37058 310 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 DAB2P98082 770 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 FLOT2Q14254 428 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 TRAPPC11Q7Z392 1133 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 RHOT1Q8IXI2 618 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 USP38Q8NB14 1042 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 DHX38Q92620 1227 aaKnown RBP12.14□□□□□ -0.47
VPS39-201ENST00000318006 ARL8AQ96BM9 186 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 NAF1Q96HR8 494 aaKnown RBP12.14□□□□□ -0.47
VPS39-201ENST00000318006 C7orf25Q9BPX7 421 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 THTPAQ9BU02 230 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 RHOBTB3O94955 611 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 MAPRE2Q15555 327 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 SWSAP1Q6NVH7 229 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 RSRC2Q7L4I2 434 aaKnown RBP12.14□□□□□ -0.47
VPS39-201ENST00000318006 HEXIM2Q96MH2 286 aaKnown RBP12.14□□□□□ -0.47
VPS39-201ENST00000318006 FAM213AQ9BRX8 229 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 TUFT1Q9NNX1 390 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 CYP26B1Q9NR63 512 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 B2RBV5 119 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 PDE5AO76074 875 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 TROAPQ12815 778 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 KYNUQ16719 465 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 ZCWPW2Q504Y3 356 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 POTEAQ6S8J7 498 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 ACAD9Q9H845 621 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 C10orf88Q9H8K7 445 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 ALG13Q9NP73 1137 aaKnown RBP12.14□□□□□ -0.47
VPS39-201ENST00000318006 GTSE1Q9NYZ3 720 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 ZNRF3Q9ULT6 936 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 PDXKO00764 312 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 FRMD5Q7Z6J6 570 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 ENGASEQ8NFI3 743 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 HSPH1Q92598 858 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 LRRC4Q9HBW1 653 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 ZNF302Q9NR11 478 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 IL1RAPL1Q9NZN1 696 aa12.14□□□□□ -0.47
VPS39-201ENST00000318006 H0Y626 953 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 TRIM16O95361 564 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 SMARCA1P28370 1054 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 SOX5P35711 763 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 PPP4CP60510 307 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 ZBTB41Q5SVQ8 909 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 TMEM35BQ8NCS4 154 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 NSL1Q96IY1 281 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 DACH2Q96NX9 599 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 FUCA2Q9BTY2 467 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 INTS2Q9H0H0 1204 aaKnown RBP12.13□□□□□ -0.47
VPS39-201ENST00000318006 RGL1Q9NZL6 768 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 SPDYE16A6NNV3 312 aaPredicted RBP12.13□□□□□ -0.47
VPS39-201ENST00000318006 AARSP49588 968 aaKnown RBP eCLIP12.13□□□□□ -0.47
VPS39-201ENST00000318006 SPDYE2Q495Y8 402 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 METTL23Q86XA0 190 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 COL23A1Q86Y22 540 aaPredicted RBP12.13□□□□□ -0.47
VPS39-201ENST00000318006 JAMLQ86YT9 394 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 KIRREL3Q8IZU9 778 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 SPDYE1Q8NFV5 336 aaPredicted RBP12.13□□□□□ -0.47
VPS39-201ENST00000318006 MDM1Q8TC05 714 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 PSPC1Q8WXF1 523 aaKnown RBP12.13□□□□□ -0.47
VPS39-201ENST00000318006 HPS3Q969F9 1004 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 PBXIP1Q96AQ6 731 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 ZBTB18Q99592 522 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 MTRQ99707 1265 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 TBX3O15119 743 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 OATP04181 439 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 YWHAHQ04917 246 aaPredicted RBP12.13□□□□□ -0.47
VPS39-201ENST00000318006 HIF1AQ16665 826 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 NCLNQ969V3 563 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 EME1Q96AY2 570 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 CCT7Q99832 543 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 A0A1W2PQJ5 194 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms